Rissa tridactyla (black-legged kittiwake): 128910919
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Entry
128910919 CDS
T09443
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128910919 (COL13A1)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128910919 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128910919
NCBI-ProteinID:
XP_054060913
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All DBs
Position
6:complement(36923176..36996590)
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AA seq
671 aa
AA seq
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MGIPGRPGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQKGEMGAAGPR
GQPGPPGQKGEKGQCAEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQGPPGPPGP
PGPTGPAGPEGTPGQPGPIGPPGKVGEPGKPGRDGKGLPGPPGPKGDPGIQGYPGRKGEV
GESGLPGAHGLPGATGPKGEKGDAGIKGERGMPGLPGRHGTKGAPGVATAGVKGEPGTPG
EKGDPGVPGRMGPPGLPGKRGQRGEKGRTGDPGLPGLPGTKGEKGNAENALVGGKGEPGP
PGLPGPPGPKGEAGDIGRPGAAGSQGEKGEPGSPGDQGPMGPRGPKGEPGKDEMMDYDGN
ISEALQEIRTLALMGPPGLPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKPGEMGPPG
PHGLPGKDGPPGIKGEPGHIGVTGEKGDKGDPGQAGSPGLDGPTGEKGEQGDQGMPGPSG
LPGPIGLPGLTGEKGEPGEHGDKGNPGESISGPPGPQGPPGPPGLQGLPGPKGEAGIDGM
KGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVSGPAGPKGERGSKGDPGVIGP
MGPAGLPGLQGLPGDKGIRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLPVQGCWN
KGQTPWLIAKK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggggatccctgggcggccgggtgctccaggagaagcaggcatgtctatcatcgggccc
cgtggtccacccggacagcctggaacaagaggttttcctggattcccgggccctattggc
ttggacggcaaaccgggtcatcctggacagaagggggagatgggtgctgcaggtcccagg
ggacaacccggacccccaggacaaaaaggagaaaagggtcagtgtgcagaatacccacac
aggctgttgcctctcctcaattcagtgcggctggctccacctccggtcataaagagacgc
actttccagggtgaacaaggacaagcaggaatccaaggtcctccagggcctcctggccca
ccagggcccactggaccagctggacctgaaggaaccccaggacagcccggaccaattggg
ccacctggcaaagtaggagaacctgggaagcctggcagagatggaaagggcttacctggg
cctcctggaccaaagggagaccctgggattcagggataccctggcagaaagggtgaggtg
ggtgagtcaggcctgcccggtgcacatggcctccctggagctactggccccaagggtgaa
aaaggggacgctggcataaagggggagagaggcatgccagggctgccaggaagacatggc
actaagggtgctcctggggtggccaccgcaggggtgaagggcgagcccgggactccagga
gaaaagggagatcccggagtcccagggaggatgggtcccccaggtttgccagggaagagg
gggcagcggggtgagaagggacgaactggtgaccctgggcttcctggactccctggcacg
aagggagagaaaggaaatgctgagaatgccctggtgggaggtaaaggagaacctggccct
cctggtctgcctggaccccctggaccaaagggagaagctggtgacattggccggcctggt
gctgcggggtcacagggggaaaagggggaacctggttcaccaggagaccagggacccatg
ggcccaaggggccccaagggagagcctgggaaggatgagatgatggactacgacggtaat
atcagtgaagctctccaggaaatacgaactttggccttgatgggacccccagggcttcca
ggtgtggctggacctccagggccaccaggacagaagggtgaaattggcttgccaggtcct
ccaggccatgatggagaaaagggaccacgcggcaaacctggagaaatgggcccgcctggc
cctcatggactgccaggaaaggatggaccacctggaataaagggagagccaggtcatatc
ggggtcacaggagaaaagggtgataaaggagatccaggacaagctggctcgccgggtctt
gatggccccactggagagaaaggtgaacaaggtgaccaagggatgccaggaccgtcagga
ttgccaggtcccattggacttccaggactgacaggagagaagggtgagcctggggagcac
ggtgacaaaggaaatccaggagaatcgatatctggccctcccggaccccaaggcccacca
ggacctccaggtcttcagggcctcccaggaccaaagggggaagcagggattgatggaatg
aaaggagagaagggtgcccagggtgaaaaaggagacagagggccactgggattacctggt
gcttcaggtttagacggcaggcctggaccaccgggtactccaggaccaattggtgtttcg
ggaccagcaggaccaaaaggagaaaggggcagtaaaggagatcctggagttataggacca
atgggaccagcagggcttcctggtttacaaggtctacctggtgacaaaggcatccggggg
gagaggggcaagaaaggctctagagggtctaaaggggataagggagaccaaggagcgcct
ggattagatgcaccctgtccgttgggggaagacggccttccagttcaaggctgctggaat
aagggtcaaactccttggctgatagccaaaaagtga
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