Raoultella terrigena: NCTC13098_07042
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Entry
NCTC13098_07042 CDS
T06046
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rtg
Raoultella terrigena
Pathway
rtg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13098_07042 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtg03021
]
NCTC13098_07042 (rho)
03019 Messenger RNA biogenesis [BR:
rtg03019
]
NCTC13098_07042 (rho)
Transcription machinery [BR:
rtg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NCTC13098_07042 (rho)
Messenger RNA biogenesis [BR:
rtg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC13098_07042 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
VDR30577
UniProt:
A0A1V2BET8
LinkDB
All DBs
Position
1:complement(5899207..5900466)
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHSKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaacctggcccgtatgcgtaagcaggatattatttttgccatcctcaag
cagcattcgaagagtggcgaagatatctttggcgatggcgtactggagatactgcaggat
ggatttggtttcctccgctccgcagacagctcctacctcgccggtcccgacgatatctac
gtatcccctagccaaatccgccgtttcaaccttcgcactggtgacaccatttccggtaag
attcgtcctccgaaagagggtgagcgttactttgcgctgttgaaagtcaacgaagttaac
tacgacaagccggaaaacgcgcgcaataagatcctgttcgagaacttaacgccgctgcac
gcaaactcacgtctgcgtatggaacgtggtaacggctcgactgaagacttaaccgctcgc
gtcctggatctggcttcgccgatcggtcgcggccagcgtggtctgattgttgctccgccg
aaagccggtaaaacgatgctgctgcagaatattgcgcagagcatcgcttacaaccatcct
gactgcgtgctgatggtcctgctgatcgacgaacgtccggaagaagtgaccgagatgcag
cgtctggttaaaggtgaagttgttgcttctacctttgacgaacccgcatcccgccacgtt
caggttgccgagatggttatcgagaaggccaagcgcctggttgagcataagaaagacgtt
atcattctgctcgactccatcacccgtctggctcgcgcctacaacaccgtcgtaccggct
tccggtaaagttctgaccggtggtgtggatgcgaacgccctgcaccgtccgaagcgtttc
ttcggtgctgcgcgtaacgtcgaagagggtggcagcctgactatcatcgctacggcgctg
atcgacaccggctccaagatggacgaagttatctacgaagagtttaaaggcaccggtaac
atggagctgcacctctcgcgtaagatcgcagaaaaacgcgtcttcccggctatcgattac
aaccgctccggtacgcgtaaagaagagctgctcaccactcaggaagagctgcagaagatg
tggatcctgcgcaaaatcatccatccgatgggtgaaatcgacgcgatggagttcctcatc
aacaagctggctatgaccaaaactaacgatgacttcttcgacatgatgaagcgttcgtaa
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