Rhincodon typus (whale shark): 109923490
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Entry
109923490 CDS
T06055
Name
(RefSeq) TRAF family member-associated NF-kappa-B activator isoform X1
KO
K12650
TRAF family member-associated NF-kappa-B activator
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04140
Autophagy - animal
rtp04621
NOD-like receptor signaling pathway
rtp04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109923490
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
109923490
04622 RIG-I-like receptor signaling pathway
109923490
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TBD
Rootletin
Zn-C2H2_12
Snapin_Pallidin
BSD
Dzip-like_N
DUF641
PKcGMP_CC
DUF1151
TMF_TATA_bd
Motif
Other DBs
NCBI-GeneID:
109923490
NCBI-ProteinID:
XP_048455503
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All DBs
Position
7:55438537..55516607
Genome browser
AA seq
485 aa
AA seq
DB search
MDKNNLGDQLNRAFEAYRQACMERDNIKKVSEQKIYDLEQELATKDQTIAKLQLQSTSTT
PRGNIPGQAQCLNPWPQSDLLKVRRNEAQHPVTYDSPDELKVALERERHCKEQLTTENSK
LEEQIKDYQQKQKELKRNLEEKDEELRQLRNELMEHTDFFTHGKQVYCRPDSKVNRKMAE
SSSKNAVPLTGTEHPLYKERLDFAFQEICQEFKQLSALTKKQTELLSKYNYSKEVINMPF
SMPIQCTDEGEQEHVEEHFVGKDENISKTSAVLQGYRMQQERLQVVESLSELDVRFPPSD
SDYDFLNSAPEKTISKTPFEDPIRKVEEALLQGDIQDLKDKNREQCTLFETFPVGPTNKT
KANHFGDEQGKTANINASVGTTIDNSTLRSPSSPSFLKPSKPFPSAESHQMVSTEPTVIR
GPQHPVWYPYHNKEGELLHQASKDSDPDLNSKTCEFCQAVFPAGTITKEEFLRHLNSHFI
AKNGF
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaacaatcttggagatcaactcaacagggcatttgaagcttatcgtcaggca
tgcatggagagagacaatatcaaaaaagtatcagaacaaaagatttatgacttagagcaa
gaattggcaacaaaagatcaaaccattgcaaaattacaattgcagtctacttctaccacc
cccagaggcaatattcctggacaagctcagtgtctgaacccctggccacagagtgacttg
ctgaaggtgagaagaaatgaggcacaacatccagtaacatatgattcaccagatgaattg
aaagtagcattagaaagagaaagacactgcaaggaacagttaacaactgaaaatagtaag
ttagaagagcagataaaagattaccagcaaaagcaaaaagaacttaaaagaaaccttgaa
gaaaaagatgaagaactcagacaactgagaaatgaattaatggagcatactgacttcttc
acacatggtaaacaggtctactgtagaccagactcaaaggtaaaccggaagatggctgaa
tcatcatcaaagaatgctgttcctttgacagggactgagcatcctctgtacaaagagagg
ttggactttgcttttcaagagatttgtcaagaatttaaacaactgtctgccttaacaaag
aaacaaacggaacttctgagtaaatataactacagcaaagaagtaataaatatgccattc
tcaatgcctatacagtgtacagatgaaggagagcaagaacatgtagaagaacattttgtt
ggcaaggacgaaaatatatctaaaacctctgctgtattacaagggtacagaatgcaacag
gaacgtcttcaagtagttgagtctctgtctgaattagatgtcagattcccaccttctgat
agtgactatgatttcctaaacagtgcaccagaaaaaacaatatcaaaaactccttttgaa
gatcccatacgtaaagttgaagaagcactgttgcaaggtgatatccaggacttgaaagat
aagaatagggaacaatgcactttatttgaaacatttcctgtgggaccaactaacaagaca
aaagccaaccatttcggtgacgagcaaggaaagactgcaaacattaatgcttctgtaggt
actacaattgataatagcacattgagaagtccttcaagcccttcatttcttaaaccatca
aaaccttttccaagtgctgaatctcatcagatggtttcaacagaaccaacagtgatcaga
ggaccacaacatcctgtgtggtatccataccacaataaagagggtgaattactgcatcaa
gcatccaaagactctgacccggacctaaactccaaaacctgtgaattctgtcaggcagtc
ttcccagcaggcaccataactaaggaagagttcctcaggcatcttaattcacactttatt
gctaaaaatggattttaa
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