Rhincodon typus (whale shark): 109927978
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Entry
109927978 CDS
T06055
Symbol
polb
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
109927978 (polb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtp03400
]
109927978 (polb)
Enzymes [BR:
rtp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
109927978 (polb)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
109927978 (polb)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
109927978 (polb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
HHH_8
DNA_pol_lambd_f
HHH_5
NTP_transf_2
HHH_2
Cdd1
Motif
Other DBs
NCBI-GeneID:
109927978
NCBI-ProteinID:
XP_020383582
LinkDB
All DBs
Position
40:2128879..2232967
Genome browser
AA seq
335 aa
AA seq
DB search
MSKRKAPQETLNEGITDFLIELANFERNVNRAMHKYNAYRKAASVIAKYPTKIKSGAEAK
KLEGVGDRIAKKIDEFLATGKLQKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIK
TLDDLRENEHILNYHQRIGLKYFEDFEKRIPRCEMVKMQAIVLREVEKLDPNYVAIICGS
FRRGAESSGDMDILLTHPDYTSESLKKPKLLNPVVECLEAINFVTNTLSKGDAKFMGVCR
LPDDSDGSDYPFRRIDIRLIPKDQYFCGVLYFTGSDLFNKNMRTQALEKGFTLNEYTIRP
LGSTGVPGEPLPVESEKDIFDYIDWQYREPQERSE
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaggaaagcaccgcaagagacgctcaatgaggggatcaccgatttcctaatc
gagttggctaacttcgagaggaatgtgaaccgagcaatgcacaagtacaacgcatacagg
aaagcagcttcagttattgcaaaatatccaacaaaaatcaagagtggtgcagaagccaaa
aagctggaaggagttggtgacaggattgcaaagaagattgatgaatttctagcaacaggg
aaactgcaaaaattagaaaagattcgtcaagatgataccagtgcatcgattaacttttta
acaagagtgactggaataggaccagcagcagcaagaaaatttgttgaagagggaatcaaa
accctagatgatctcagagaaaatgaacacatactaaattatcatcagcggattggtttg
aagtattttgaggattttgaaaagcgcattcctcgatgtgaaatggtgaaaatgcaggcc
attgttttacgggaagtggagaaactggatccaaactatgttgccatcatttgcggcagt
tttagacgaggtgctgaatccagtggtgatatggatattcttttgactcatcctgactac
acttcagaatcattaaaaaagccaaaacttctcaatccagttgtggaatgcctggaagcg
ataaattttgtcacaaacacgctttccaaaggagatgccaaattcatgggtgtttgccga
ttgccagatgatagtgatggtagtgattatccattcaggagaattgacattaggctaatt
ccaaaagatcagtatttctgcggtgtgctttatttcactggcagtgatctttttaacaag
aacatgaggacccaagcactagaaaaaggcttcacattgaatgagtacacaattcgccct
ttgggaagcacaggagtgccaggagaaccactgcctgttgaaagtgaaaaggacatcttt
gattacattgactggcaataccgagagccacaagagcgaagtgagtga
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