Rhizobium tumorigenes: PR017_10615
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Entry
PR017_10615 CDS
T08990
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rtu
Rhizobium tumorigenes
Pathway
rtu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PR017_10615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtu03019
]
PR017_10615
Enzymes [BR:
rtu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PR017_10615
Messenger RNA biogenesis [BR:
rtu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PR017_10615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
Helicase_C_2
UTP25
AAA_19
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WFR94291
LinkDB
All DBs
Position
2155264..2156844
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AA seq
526 aa
AA seq
DB search
MSEQIVTSLTQQGYSTPTPIQAEAIPLVLQGRDLVGLAQTGTGKTAAFGLPIIEMLMKDG
KRPEHRSTRTLILAPTRELVNQIAASLKEYTRKTQLKIGLVVGGASINKQQMQMERGVDI
LVATPGRLLDLIARRALTLGHVSYLVLDEADQMLDLGFVHDLRKISKMVPAKRQTLLFSA
TMPKAIADLAADFLSNPARVEVSPPGKAADKVEQFVHFVSGQNHKTELLKESMNANPDGR
AMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKSFKDGETRVLVATDVAAR
GIDIPGVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEIRLLRDIERLMSID
IQVASGEAPADRARPARGGGGGNRSGAGGNRGGGQGQGRGAGSGAPRSDGRPARRPRPDG
DFRSETRGDRPAVARENNRNADFRGQRTAERAPREIDNDLASTSDFRPAKAPQRPRPAGD
NGAPRSRPPHGRPAHKAGETRGRPDGNNGQARKPAGGRPGPRREQA
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgaacagattgtgacgtctctgacccaacagggatattcgacccctaccccgatc
caggcggaagccattccgctcgttctccagggccgtgacctcgtcggcctcgcccagacc
ggcaccggcaagacggccgctttcggcctgccgatcattgaaatgctgatgaaggacggc
aagcgtcccgaacaccgcagcacccgtacgctgatcctcgcgccgacccgcgaactggtg
aaccagatcgctgccagcctgaaggaatacacccgcaagacgcagctgaagatcggcctc
gtcgttggcggcgcttcgatcaacaagcagcagatgcagatggaacgcggtgtcgacatt
ctcgttgcaacgcctggccgcctgctcgacctgatcgcccgtcgcgccctgacgctcggc
catgtgtcctacctcgtcctcgacgaagccgaccagatgctcgacctcggcttcgtacac
gacctgcgcaagatctcgaagatggtcccggccaagcgccagacgctgctgttctcggcc
accatgccgaaggccatcgccgatctcgctgccgacttcctgagcaacccggcccgtgtc
gaagtttcgcctcccggcaaggctgcggacaaggtcgaacagttcgttcacttcgtttcc
ggccagaaccacaagaccgaactcctcaaggaatcgatgaacgccaacccggacggccgc
gccatggtcttcctgcgcaccaagcacggcgccgagaagctgatgaagcatctcgagcac
gtcggcttcgcggcagcctcgatccacggcaacaagagccagggccagcgcgagcgtgct
ctgaagtccttcaaggatggtgaaacccgcgttctcgtcgccaccgacgtcgctgcccgt
ggcatcgacatccccggcgtcagccacgtctacaactacgacctgccggaagtaccggat
gcctacgttcaccgcatcggccgtacggcccgtgccggtcgcgacggcattgccatcgcc
ttctgcgctccggatgaaatccgtcttctgcgcgacatcgaacgcctgatgtccatcgac
atccaggttgccagcggcgaagccccggcagaccgtgctcgtcctgcacgtggtggcggc
ggcggcaatcgctcgggcgccggtggcaaccgtggtggtggccagggccagggtcgtggc
gccggatcgggcgctccccgctccgacggccgtccagcccgtcgtccgcgtccagacggt
gatttccgcagcgaaactcgcggcgatcgcccggcagttgctcgcgaaaacaaccgcaac
gccgacttccgtggccagcgcaccgcagaacgcgcgccacgcgagatcgacaacgatctg
gcttcgacctcggatttccgcccagccaaggcgccgcagcgtcctcggcccgccggcgac
aacggcgcaccacgcagccgtccgccgcacggccgcccagctcacaaggctggcgaaacc
cgcggtcgtcctgacggcaacaacggccaggcccgcaagccagccggcggtcgtccaggt
cctcgtcgcgaacaggcgtaa
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