Hungateiclostridiaceae bacterium KB18: A4V00_07515
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Entry
A4V00_07515 CDS
T04437
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ruk
Hungateiclostridiaceae bacterium KB18
Pathway
ruk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ruk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4V00_07515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ruk03400
]
A4V00_07515
Enzymes [BR:
ruk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4V00_07515
DNA repair and recombination proteins [BR:
ruk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A4V00_07515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
UB2H
ResIII
FerA
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANU53892
UniProt:
A0A1C7GQU0
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All DBs
Position
complement(1518085..1521552)
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AA seq
1155 aa
AA seq
DB search
MRSIFSALSRSPEYVQLQRALSSGDTPAVAAGVSGVHKCVLTAGLMKGSGKRALVVAADE
AEAQRFTEDLKSLGLNPANYPLRDFNFRDSAVSSHEYERQRLRALSRLRDGSCDCIVSCI
DAALQLTLGPEELDRRLFTLSSGQALSIDQLLSALTSCGYTREDQIEGPGQFSRRGGIVD
FFSPNAPLPVRVEFWGDEIDSISSFDPATQRRTDPLPEVTLAPCTEVIPQNRAALIKRIE
ALSKSLRGKRAPKAKEILMAEAQKLADGLSIGCMDKYLPLVYERPATLFDYFNERDSLIV
FSEGTRLKERVRTTLVQWSEDLTSYLEDGLLCKGLDKYSETWEYALSQAQRAPSFFMDVF
ARGTYEIPTKTLVNITVRQFPAWGGGVQLLQEDLSALLRQGRACVVLSGTERAGKALAED
LKQSGLPAAYIEDPSTAAKGTVTVVPGSLSAGFDWPDADFALISRGRIAAGAAVKKIKKN
KNAREISSLSELSPGDYVVHATHGIGVFEGIHKVEMNGIEKDYILIRYARNDSLYVPVTQ
LDMVSKYIGPREDSGIRLSRLGGADWQQKKQRVRAAVKNIAKELIELYAKRMQQEGFPFP
EDGEWQRDFESRFEFEETDDQLRCVGEIKSDMERAVPMDRLLCGDVGFGKTEVALRAAFK
CVTGGKQCAILVPTTILAWQHYQTILRRMEGFPIDVGLLSRFRSPKQQEETLKRLKRGAV
DIVVGTHRLVSKDVKFKDLGLVIIDEEQRFGVAQKEKLKALCSRADVLTLSATPIPRTLN
MALSGIRDMSVIEEAPQDRHPVQTYVMEHDNGVICDAIRRELRRGGQVYYLHNDTASISR
TAARLQEAIPEARVGFGHGKMDEEELSEVWRQLLDHEIDILVCTTIIETGVDVPSANTLI
IENADRMGLSQLHQLRGRVGRSSRRAYAYLTYTPNKSLQEIAQKRLSAIREFTEFGSGFK
IAMRDLEIRGAGNVLGGEQHGHMEAVGYDMYVKLLNEAVSLMKGEEVKAPVDEGCTVDMQ
VSAHIPEDYIESIDLRLEVYRRIAGIQDQEDALDVTDELIDRFGEPPEAVRGLIEIALLR
GRAAWLGINEIKQQNDSLLLYQREVDMAQVERLIKAMNGQVMVSAGSKPYLSVKLGGAPP
LEVLSRVLKIMGENE
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcaattttttcagccctctcccgctctcccgaatacgttcagctgcaaagagcg
cttagctccggggacacccctgccgtggcggcgggagtgtccggggtgcacaaatgcgta
ctgactgcggggctcatgaagggttccggcaaaagggctcttgttgtcgccgccgacgag
gcggaggcccagcgctttaccgaggacttgaagagcctgggacttaacccggcaaattac
cctctgagggactttaacttccgggactccgccgtgtcctcccacgaatatgagcgccag
cgcttacgggccctctcccggcttcgtgacggctcctgcgactgcattgtaagctgtata
gacgcggcactgcagctcactctgggcccggaggagctggaccggcggttattcacttta
agctccggccaggccctttccatagaccagcttttatccgcccttacctcctgcggctat
acccgggaggaccagatagagggcccgggccagttcagccgccggggcgggatagtggac
tttttctcccccaatgccccgctgccggtgcgggtggagttctggggggacgagatagac
tctatctccagcttcgaccccgccacccagcggcgcacggacccactcccggaggtcacc
cttgccccctgcacggaggtgatacctcagaaccgcgccgcgcttataaagaggatagag
gccctctcgaagtccctcaggggcaagagggcccccaaggccaaagagatacttatggcc
gaagcccaaaagcttgctgacggccttagtattgggtgtatggacaaatatctcccgctg
gtgtacgagcgcccggccacgctgttcgactacttcaacgaaagggacagcttgattgtt
ttctcagagggcacaagattaaaggagcgggtgaggacaaccctggtccagtggtccgag
gacctgacctcatatcttgaggacgggctgctctgcaaggggctggacaaatattccgag
acctgggagtatgctctctcgcaggcccagcgggcgcccagcttctttatggacgtgttc
gcccggggcacctatgagatacccaccaaaacccttgtgaacatcaccgtccggcagttc
ccggcctggggcggcggggtccagcttttgcaggaggacctttcggccctgctcaggcag
gggcgggcctgcgtggtgctttcgggcacggagcgggcgggcaaggcccttgcggaggac
ttaaagcagtcgggacttccggcggcgtatattgaggacccctccaccgccgcgaagggc
accgtgacggtggtgccgggctccctttcggcgggcttcgactggccggacgcggacttt
gcccttatttcccgaggaaggatagccgccggggccgccgtaaaaaagataaagaagaat
aagaacgccagggagatctccagcctgtcggagctctctcccggggattacgtggtacac
gccacccacggcatcggcgtatttgagggcatccataaggtggagatgaacggcattgag
aaggactatatactgatacgctatgcgcgcaacgactctttatacgtgccggttacccag
cttgatatggtatcgaagtatatcggccccagggaggactccggcataaggctcagcaga
ttgggcggcgcggactggcagcagaaaaagcagcgggtccgtgcggcggtaaagaatata
gccaaggagcttatagagctctacgccaagcgtatgcagcaggagggcttccccttcccg
gaggacggggaatggcagcgggactttgagagccggttcgagttcgaggagaccgacgac
cagctgcgctgtgtgggagaaataaaatccgacatggagcgcgccgtgcccatggaccgg
ctcttatgcggggacgtgggttttggcaagaccgaggtggcgctgcgggcggcgttcaag
tgtgtgaccgggggcaagcagtgcgcgatcttggtgcccaccaccattctcgcctggcag
cattaccagaccattttaagacgcatggagggctttcccattgacgtggggcttctctcc
cggttcagaagccccaagcagcaggaggaaactttaaagcgtctgaagcgcggggccgtg
gatatagtggtgggcacccacaggctggtgtcaaaggacgtgaagttcaaggacctgggg
ctggtgataatcgacgaggagcagcgcttcggcgtggcacagaaggaaaagctgaaggca
ctttgcagccgggcggacgtgctgaccctctcggccacacctattccccggacccttaac
atggccctgtcgggtatccgcgatatgtcggtgatagaggaggccccacaggaccggcac
ccggtgcagacctatgtgatggagcacgacaacggcgtgatatgtgacgccatcagaagg
gagctccggcgcggcgggcaggtgtactatctccataacgacaccgcctccatctcccgc
acggcggcaaggctccaggaggccatacccgaagcgagggtgggcttcggccacgggaag
atggacgaggaggagctaagcgaagtctggcggcagcttctggaccatgagatagatatt
ttggtgtgcacgaccattatagagaccggcgtggacgtgcccagcgccaacacccttata
atagaaaacgcggaccggatgggcctttcacagcttcaccagctccggggccgggtgggc
agaagctccagaagggcttacgcttacctcacctatacccccaataagtccctgcaggag
atagcccagaagcggctctcggccataagggagtttacggagttcggctcgggcttcaag
atagccatgcgggacctggagatacggggcgcgggcaatgtgctgggcggggagcagcac
ggccatatggaggccgtgggttatgatatgtacgtgaagcttttaaacgaggccgtcagc
cttatgaagggcgaggaggtaaaggccccggtggacgagggctgcacggtggatatgcag
gtttcggcccatattcccgaggactatatcgagagcatagacctgcgcctggaggtctac
cgcaggatagccgggattcaggaccaggaggacgctttagacgtgaccgacgagctcatc
gaccgctttggagagccgcccgaagctgtcagggggcttatagagatagctctgctccgg
ggcagggcggcgtggctgggcataaacgagataaagcagcagaacgactccctgcttctg
taccagcgcgaggtggacatggcccaggtggagcggctcataaaggccatgaacggccag
gtgatggtcagcgccggcagcaagccctatctcagcgtgaagctggggggggctcctcct
cttgaggtcctttcaagggttttaaaaatcatgggggaaaatgagtag
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