Ralstonia wenshanensis: KOL96_10585
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Entry
KOL96_10585 CDS
T08691
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rwe
Ralstonia wenshanensis
Pathway
rwe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rwe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KOL96_10585 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rwe03400
]
KOL96_10585 (ligD)
Enzymes [BR:
rwe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KOL96_10585 (ligD)
DNA repair and recombination proteins [BR:
rwe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KOL96_10585 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UGS91551
LinkDB
All DBs
Position
complement(585313..587916)
Genome browser
AA seq
867 aa
AA seq
DB search
MPRHLADYRRKRDFTQTQEPAGARRKADEQRENGALHFVIQKHDATRLHYDFRLELDGTL
KSWAVPKGPSLDPADKRLAVHVEDHPLDYADFEGHIPEGQYGGGDVIVWDRGTWRPHGDP
RKAYRDGKLKFDLDGEKLHGAWALVRTHLHGTGKHPKEQWLLIKERDDQVRASTDYDVTQ
ALPASVITGETVGTKPRAKGKAKAGDGRTERSEPAQVRPPAGAVPATLPRTLEPQLATLV
DGPPTHGEWDYEVKFDGYRILARIDGNTVRLFSRNGRDWTAKLPRQARTLRALGLREAWL
DGEVVVMGERGVPDFQALQNAFETAHAEHIAYYLFDIPFCNGMDLRGVPLRERRALLQRI
LDAAPGDLDRDAVLFSGTFNAAPEDLLSSACSMSLEGVIGKRADAPYRAGRSPAWIKLKC
GQRQEFVIGGYSAPKGSRSGFGALLLGVYDDAGKLRYAGRVGTGFNETSLHALHHELTGL
TIDTPPFANPPSGSDARDVQWVKPERVAEIAFAEWTREGMVRQAVFQGLRDDKPARNIVR
EQAKPPSATARKETRAVHAPERKVRPGAERIADVDVTHPDRVIEKAGGTTKADLARYYAS
VAEWMLPHLHNRPTSLVRAPDGIDGERFFQKHSAALKLQGITQLDPSLDPGHPSLLAINS
AEALVGAVQMGTVEFHTWNALADRIEQPDRIVFDIDPDPALPFARVIEATQLTLALLDEL
GLKAFLKTSGGNGMHVVVPLTRREAAGWDTLKAFAQAVVQHMAATFPDRFVAKMGPQNRV
GKIFIDYLRNNRGASTVAAYSVRARTGLPVSVPIRHDELEGLQASAQWTLRTLPERLAKL
KGDPWADYAGTRQSVTADMRKRIGAND
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgccacgccatctcgccgactaccgccgcaagcgcgatttcacgcagacacaagaaccc
gcgggtgcacgccgcaaagccgacgagcagcgtgaaaacggcgccttgcacttcgtgatc
cagaagcacgacgccacgcgtttgcattacgacttccggctcgaactcgacggtacgctc
aagagttgggccgtccccaagggcccgagcctggaccccgccgacaagcgtctcgccgtg
catgttgaagaccacccgctggactacgcggatttcgaaggccacatccccgaaggccaa
tacggcggtggcgacgtcatcgtatgggaccgcggtacgtggcgcccgcatggcgatccg
cgcaaggcgtaccgcgacggcaagctcaaattcgatctcgacggcgagaagctgcacggc
gcatgggcgctggtgcgcacgcatttgcacggcacggggaagcatccgaaagaacagtgg
ctgttgatcaaggagcgcgatgatcaggttcgcgcatcgaccgactacgacgtgacgcag
gcactgcccgccagcgtgatcaccggggaaaccgtcggcacaaagccccgggccaaagga
aaggccaaggccggtgacggcaggacggagcgttccgaaccggcgcaagtgcgaccaccc
gccggtgccgtgcccgccacgttgcccagaacgctggagccccaactcgccacgctggtc
gatgggccgcccacccacggcgagtgggactacgaagtgaaattcgacggctaccgcatc
cttgcgcgcatcgacggcaacaccgtgcgcctgttcagccgcaacggccgcgactggacg
gccaagctgccgcgccaggcgcgcacgctgcgcgcgctgggcctgcgtgaggcgtggctc
gacggcgaagtcgtggtgatgggcgaacgcggcgtgcccgacttccaggcgctgcagaac
gcctttgaaaccgcgcatgccgaacacattgcctactacctgttcgacatcccgttctgc
aacggcatggacttgcgcggtgtgccgttgcgcgagcggcgggcgctgctccaacgcatt
ctcgatgccgcgccgggtgacttggaccgcgatgcggtgctgttctcaggcacgttcaac
gcggcacccgaagatttgctgtcttccgcatgcagcatgtcgctcgagggtgtgatcggc
aagcgcgcggatgcgccgtaccgcgccggccgcagcccggcatggatcaaactcaaatgc
gggcagcggcaggaattcgtgatcggcggctacagcgcgcccaagggcagccgcagcggc
ttcggcgcactcctgctcggcgtctatgatgacgcgggcaagctgcgctatgcggggcgc
gttggcaccggcttcaacgagacgagcctgcacgccctgcatcacgaactgacggggctg
accatcgacacgccgccctttgccaacccgcctagcggcagcgacgcgcgcgacgtgcaa
tgggtcaagccggagcgtgtggccgaaatcgcctttgccgaatggacgcgcgaaggcatg
gtgcggcaggcggtgtttcaaggtttgcgcgacgacaaacccgcgcgcaacatcgtgcgt
gaacaagccaagccgcccagcgccaccgcccgcaaggagacccgcgccgtgcatgccccc
gaacgcaaggtgcgccccggtgccgaacgcatcgcggatgtcgacgtcacgcatccggat
cgcgtgatcgagaaagccggcggcaccaccaaggccgacctggcgcgctattacgcgagc
gtggccgaatggatgctgccgcatctgcacaaccggccgacgtcgctggtgcgcgcgccc
gatggcatcgacggcgagcgcttcttccagaagcattccgccgcgctcaagctgcagggc
atcacgcagctggacccgtcgcttgatccggggcatccgtcgctgctggcgatcaactcg
gcggaagccctggtcggtgcggtgcagatgggcacggtggaattccacacgtggaatgcg
ctggccgaccgcatcgaacagcccgaccgcatcgtcttcgatatcgacccggacccggcg
ttgcccttcgcacgggtgatcgaggccacgcagcttacgctcgcgctgctcgatgaactc
ggcctgaaggcgttcctgaaaaccagcggcgggaacggcatgcacgtggtggtgccgctc
acgcgccgcgaggcggccggctgggacacgctcaaagccttcgcgcaagccgtggtgcag
cacatggccgcaactttccctgaccgctttgtcgccaagatgggcccgcagaaccgcgtg
ggaaaaatcttcatcgactatctgcgcaacaaccgcggcgcgagcacggtggcggcgtat
tcggtgcgcgcgcggactgggctgccggtgtcggtgccgatccgccatgacgaactggag
gggctgcaggcgtctgcccagtggacgctgcgcacgctgccggagcggctggccaagctc
aagggtgatccgtgggccgactacgccggcacgcgccaatcggtcacggccgatatgcgc
aagcgcatcggcgccaatgactga
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