Shewanella algae: BS332_04180
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Entry
BS332_04180 CDS
T05622
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
salg
Shewanella algae
Pathway
salg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BS332_04180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salg03400
]
BS332_04180
DNA repair and recombination proteins [BR:
salg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BS332_04180
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BS332_04180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
AAA_23
AAA_21
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_25
NACHT
APS_kinase
T2SSE
nSTAND3
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AXQ13641
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All DBs
Position
926067..928889
Genome browser
AA seq
940 aa
AA seq
DB search
MDKIDIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC
PVHGQPLAAQTVSQMVDKVLERPEGERLMLLAPVVQGRKGEHVKLLENLAAQGYIRARID
GEVCDLSDPPPLDLHVKHNIDVVVDRFKVREDLQQRLAESFETALELSGGVATVASMEEG
SNEELLFSANFACPHCGYSMAELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVITNDEL
SLAGGAIRGWDRRNFYYFQMLTSLAEHYGFDVETPFGDLPAKVKKIVLYGSGKENVAFRY
INDRGDVVVRNHPFEGILNNMDRRYRETESNSVREELAKYISNQACSSCGGSRLREEARN
VFIGNINLPELTTWSIGEASDYFATLGFEGQKAQIAEKILKEVGDRLGFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLTHLRDLGNT
VIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGDINAIMACEESVTGQYMSGKKKITV
AGGRVPCDPGKMIKLFGASGNNLKQVDLEIPVGLLTCVTGVSGSGKSTLINDTFFKIAHR
MLNGATAEEPAPYERIEGMELCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFSATQE
SRTRGYQPGRFSFNVKSGRCEACQGDGLIKVEMHFLPDVYVPCDVCKGKRYNRETLEVKY
KGKNIHEVLQMTVEEARVFFDAVPAIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL
AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGTILVAGTPEQVAEHPESHTARFLKPML
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggacaagatagacattcgcggtgccagaacccacaatctcaagaacatcaatctgacc
attccccgagacaaactcattgttattacaggcttatctggttcgggtaaatcttctctc
gccttcgataccctctacgccgaaggtcagcggcgctatgtggaatccctgtcggcctat
gcccgccaatttttgagcctgatggaaaaaccggatgtggatcatatcgaaggtctgagc
ccggcgatctcgattgaacagaagtccacttcccacaacccccgttctactgtgggaacc
attaccgaaatctacgactatctcagattactgtttgcccgtgtgggtgagcctcgttgc
ccggttcacggccagccgctggcggcacaaactgttagccaaatggtagacaaggtgctg
gagcgccccgaaggcgagcgcctgatgctgttggcccccgtagtgcagggccgcaagggt
gaacatgtcaaattactggagaacctggcggcccagggctatattcgcgcccgtatcgat
ggcgaggtgtgcgatctgtccgacccgccgccactggatctgcatgtaaaacacaatatc
gatgtggtggttgaccgcttcaaggtacgcgaggatctgcagcagcggctggcggaatcc
ttcgaaaccgcactggagctgtccggcggtgtggccactgtggccagcatggaggaaggc
agcaatgaagagttgctgttctccgccaacttcgcctgccctcactgtggttactccatg
gccgagttggaacccaggctgttttccttcaacaacccagcaggtgcctgcccgacctgt
gacggcctcggggtgcagcagtttttcgatcccgatcgggtaatcaccaacgacgagctg
tcgctggcgggtggcgccattcgcggctgggacagacgcaacttctactatttccagatg
ctcacctcactggccgagcattacggcttcgatgtggaaaccccctttggcgatctccct
gccaaagtgaagaagatagtgctctatggctcaggcaaggagaatgtcgccttccgttat
atcaacgaccgcggcgatgtagtggttcgcaaccacccgttcgaggggatcctcaacaac
atggacagacgctaccgggagacagagtccaactcggtgcgtgaagagctggccaaatat
atcagcaaccaggcctgttccagctgtggcggctcacgcctgcgcgaagaggcccgcaac
gtgtttatcggcaatatcaatctgccggagttgaccacctggtccattggcgaggccagc
gactatttcgccaccctgggctttgaggggcaaaaggcacagatagccgagaagatcctc
aaggaagtgggcgatcgcctgggctttttggtcaatgtcggtcttaactacctgagtttg
tctcgttcggcagaaaccctctcaggtggcgaggcgcagcggatccgcctggccagccaa
atcggcgctggtctggttggggtgatgtatgtactcgatgaaccttcgattggtctgcac
cagcgcgacaacgagcgcctgctcaacaccctcactcacctgcgggacttgggcaacact
gtgatagtggtcgaacacgatgaagacgccatccgcatggcggatcatattatcgatatc
ggcccaggtgccggggttcatggcggtgaagtgatctgtgacggtgacatcaacgccatt
atggcctgtgaagagtctgtcaccggccaatatatgtccggcaagaaaaagatcactgtg
gccggaggtcgggtgccctgtgatcctggcaagatgatcaagctgttcggtgccagtggc
aacaacctcaagcaggtggatctggagatcccggtcgggctgctgacctgtgtcaccggg
gtatccggctcgggtaaatccaccctgatcaacgacaccttcttcaagattgcccatcgc
atgctcaacggcgccaccgccgaagagccggcgccttatgagcgtatcgagggcatggaa
ctgtgcgacaaggtggtggatatagatcaaagccccataggccgcacgccgcgctccaac
ccggccacctataccggcatatttaccccgatccgcgagctattttcggcgactcaggaa
tcccgtacccgcggctatcagccggggcgtttctccttcaacgtcaagagcggccgctgt
gaggcctgtcagggtgacggccttattaaggtagagatgcacttcctgccggatgtgtac
gtgccttgcgatgtctgtaagggcaagcgctacaaccgtgaaacgctggaagtgaagtac
aagggcaagaacattcacgaagtgctgcaaatgacggtcgaggaagcccgtgtgttcttc
gatgcggtgccggccattgcccgtaaactgcaaaccctgatggatgttggtctgtcttat
atacgtttgggccagagcgccactaccctttccggcggcgaggctcagcgggtcaaactg
gctaaagagctatcgaagcgggataccggcaagaccctctatattctggatgaacccact
acagggctgcactttgccgatatccagctgctgctggatgtactgcacagactcaagtcc
cagggcaacaccatagtggtgattgaacacaatctggatgtgatcaaaaccgctgactgg
atagtggatctggggccggaaggcggttcgggtggcggtaccattctggtggccggtacc
ccagagcaggtagccgagcatccagagtcccataccgcccgcttccttaaacctatgctg
tga
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