KEGG   Silicimonas algicola: EF888_15900Help
Entry
EF888_15900       CDS       T05779                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
salo  Silicimonas algicola
Pathway
salo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:salo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EF888_15900 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:salo03400]
    EF888_15900 (ligD)
Enzymes [BR:salo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EF888_15900 (ligD)
DNA repair and recombination proteins [BR:salo03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EF888_15900 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AZQ68484
UniProt: A0A316G4F6
LinkDB All DBs
Position
3247713..3250133
Genome map
AA seq 806 aa AA seqDB search
MARLDRYHGMRDFAATPEPDGSGVSATGGLAPAYSIQNHDATRLHWDLRLEWDGVLLSWA
ITRGPSLDPGEKRLAVETEDHPLDYLTFEGTIPEGNYGAGTVMLWDIGHWQPLMDVQKGL
KKGHLHFALHGERMSGKWNLVRMNREGKRTNWLLMKEDDEAAHAPDPVERYKTSVVTNRG
FDAIAKDEAPVPVAKRKGVTPKWRAPQLATQTDALGDPGSRWHELKFDGYRALCAVGKSG
VRIFSRNGHDWTDRFAPLVRPLERLDCDTALIDAEVTVGAGLYGFGALQRAISAGGPFTL
NAFDLLWLDGKSLVSQPLDARRDALEGLFDDTPPLGRLQLSPVLRGDADGAFQSICDTGG
EGLISKRIDAPYRGGRSTVWQKIKCIKRDEFVILGWQASDKRGRPFASLLLGVEDAGGWV
YVGKVGTGWDGETADDLAAKLKPLARKSAPVDVEAAEAKGVTWVTPRLVAEIRYAETTDQ
GRLRHATFIGLRDDKPPAQVVRPAAARLVAKDAITVSGVAISSADRVVFPKPKVTKGDVA
DYYAQVAERMLPDMADRPLSLVRLPEGLGGESFFQKHRGKGFPDAIRSIPIPEKNGGVED
YMTITTAEGLVGAAQVGTIEFHIWGSRRDRLERPDRMVFDLDPDEGLGFAKVRKAAFDVR
DRLESLGLPSWPLLTGGKGIHVVVPLRRTADWPAVSLFARTFAAHLAAAEPKRFVATMSK
AKREGRIFIDWMRNERGSTAIAPWSLRARPGAPVAVPVTWDELPSFRRANGVSIREALDR
PVPDRPEPATLNARVVERLEAWVSDR
NT seq 2421 nt NT seq  +upstreamnt  +downstreamnt
gtggcccggctcgatcgatatcacgggatgcgcgatttcgcggcgacgcccgagcctgac
ggttcgggcgtctcggcgaccggtggcctggcacccgcctattccatccagaaccacgac
gccacgcggctgcactgggaccttcgactggagtgggatggcgttctgctgtcctgggcg
ataacgcggggcccctcgctagatccgggcgagaagcgtctggcggttgaaaccgaggac
cacccgctcgactacctgacgttcgagggcacgatccccgagggcaactacggcgcgggc
accgtcatgctctgggacatcggacactggcagccgctcatggacgtccagaaagggttg
aagaaaggccatctgcacttcgcgcttcatggcgagcggatgagcggaaagtggaacctc
gtgcgcatgaaccgcgagggtaagcgcacgaactggcttctgatgaaggaagatgacgag
gcggcgcacgcccccgaccccgtcgagcgctacaagaccagcgtggtcacgaaccgaggc
ttcgacgccatcgccaaggacgaggcgccggtaccggttgcgaagcgaaaaggcgtgacg
ccgaagtggcgcgcgccgcaactcgcgacgcagaccgacgctctcggtgatcccgggtcg
cggtggcacgaactgaagttcgacggctatcgcgccttgtgcgccgtcggaaagtctggc
gtgcgcatcttctcgcgcaacgggcacgactggacggaccgtttcgcgccgctcgtccgc
ccgctggagcgtctcgactgcgacacggcgctgatcgacgcggaggtgaccgtcggcgcg
ggtctttacggcttcggtgcgcttcagcgcgcgatttcggcgggtgggcctttcacgctc
aacgccttcgaccttctctggctcgacggcaaaagccttgtgtcccagcctcttgacgct
cgacgcgacgctctggaaggtctcttcgacgacacaccgccccttggccggcttcaactc
tcgcccgtcctgcgaggcgatgccgacggcgcgttccagtcgatctgcgacaccggcggc
gagggcctgatctcgaagcgcatcgacgccccctatcgcggcggacgctcgacggtctgg
cagaagatcaagtgcatcaaacgcgacgaattcgtcatcctcggctggcaggcgtccgac
aagcgcgggcggcccttcgcctcgctcctcctcggtgtcgaggatgccgggggctgggtc
tatgtcggcaaggtcggcaccgggtgggacggagagactgccgacgatcttgccgcgaag
ctgaagccgctcgcccgcaagtctgcgcccgtggacgtcgaggcggcggaagcgaagggg
gtaacatgggtgacgccccgcctcgtcgccgagatccgctatgccgagacgacggatcag
ggccgcctgcgtcacgcgactttcatcgggctgcgcgacgacaagccgccagcgcaggtc
gtgcgtcccgccgcggcgcgcctcgtggcgaaggacgccatcaccgtttcgggcgtcgcc
atcagctcggcggaccgggtcgtctttccgaagcccaaggtcacgaagggcgacgtcgcg
gactactacgcccaggtcgccgagcggatgctcccggacatggccgaccggccgctgtcg
ctggtgcggctaccggaggggctgggcggagagtcgttcttccagaagcaccgcggcaag
ggctttcccgacgccatccgatctatcccgattcccgaaaagaacggcggtgtcgaggac
tacatgaccatcacgacggccgaaggccttgtcggcgcggctcaggtcggcaccatcgag
ttccacatctggggctcgcggcgggaccggctcgagcgcccggaccgcatggtcttcgac
ctcgaccccgatgagggtctcgggtttgccaaggtgcggaaggccgccttcgacgtgcgc
gacaggctggaaagtctcggcctgccgtcctggccccttctgaccggcggcaagggaatt
cacgtcgttgttcccctgcgccggacggcggactggccggccgtctccctcttcgcccgc
accttcgccgcgcatctcgccgccgctgaaccgaagcgcttcgtcgccaccatgtcgaag
gccaaacgcgaggggcgcatcttcatcgactggatgcgcaacgagagaggatcgacggcc
atcgctccgtggtcgcttcgggcgaggccgggcgcgcccgtcgcagtccccgtgacctgg
gacgaactgccttcgttccgccgtgcgaatggcgtgtcgatccgcgaggcactcgaccgc
cccgtgcccgaccggccggaacccgccacactgaatgcccgcgtcgtcgagcggcttgaa
gcctgggtctcggaccgatga

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