Silicimonas algicola: EF888_15900
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Entry
EF888_15900 CDS
T05779
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
salo
Silicimonas algicola
Pathway
salo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EF888_15900 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_15900 (ligD)
Enzymes [BR:
salo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EF888_15900 (ligD)
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EF888_15900 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AZQ68484
UniProt:
A0A316G4F6
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All DBs
Position
3247713..3250133
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AA seq
806 aa
AA seq
DB search
MARLDRYHGMRDFAATPEPDGSGVSATGGLAPAYSIQNHDATRLHWDLRLEWDGVLLSWA
ITRGPSLDPGEKRLAVETEDHPLDYLTFEGTIPEGNYGAGTVMLWDIGHWQPLMDVQKGL
KKGHLHFALHGERMSGKWNLVRMNREGKRTNWLLMKEDDEAAHAPDPVERYKTSVVTNRG
FDAIAKDEAPVPVAKRKGVTPKWRAPQLATQTDALGDPGSRWHELKFDGYRALCAVGKSG
VRIFSRNGHDWTDRFAPLVRPLERLDCDTALIDAEVTVGAGLYGFGALQRAISAGGPFTL
NAFDLLWLDGKSLVSQPLDARRDALEGLFDDTPPLGRLQLSPVLRGDADGAFQSICDTGG
EGLISKRIDAPYRGGRSTVWQKIKCIKRDEFVILGWQASDKRGRPFASLLLGVEDAGGWV
YVGKVGTGWDGETADDLAAKLKPLARKSAPVDVEAAEAKGVTWVTPRLVAEIRYAETTDQ
GRLRHATFIGLRDDKPPAQVVRPAAARLVAKDAITVSGVAISSADRVVFPKPKVTKGDVA
DYYAQVAERMLPDMADRPLSLVRLPEGLGGESFFQKHRGKGFPDAIRSIPIPEKNGGVED
YMTITTAEGLVGAAQVGTIEFHIWGSRRDRLERPDRMVFDLDPDEGLGFAKVRKAAFDVR
DRLESLGLPSWPLLTGGKGIHVVVPLRRTADWPAVSLFARTFAAHLAAAEPKRFVATMSK
AKREGRIFIDWMRNERGSTAIAPWSLRARPGAPVAVPVTWDELPSFRRANGVSIREALDR
PVPDRPEPATLNARVVERLEAWVSDR
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
gtggcccggctcgatcgatatcacgggatgcgcgatttcgcggcgacgcccgagcctgac
ggttcgggcgtctcggcgaccggtggcctggcacccgcctattccatccagaaccacgac
gccacgcggctgcactgggaccttcgactggagtgggatggcgttctgctgtcctgggcg
ataacgcggggcccctcgctagatccgggcgagaagcgtctggcggttgaaaccgaggac
cacccgctcgactacctgacgttcgagggcacgatccccgagggcaactacggcgcgggc
accgtcatgctctgggacatcggacactggcagccgctcatggacgtccagaaagggttg
aagaaaggccatctgcacttcgcgcttcatggcgagcggatgagcggaaagtggaacctc
gtgcgcatgaaccgcgagggtaagcgcacgaactggcttctgatgaaggaagatgacgag
gcggcgcacgcccccgaccccgtcgagcgctacaagaccagcgtggtcacgaaccgaggc
ttcgacgccatcgccaaggacgaggcgccggtaccggttgcgaagcgaaaaggcgtgacg
ccgaagtggcgcgcgccgcaactcgcgacgcagaccgacgctctcggtgatcccgggtcg
cggtggcacgaactgaagttcgacggctatcgcgccttgtgcgccgtcggaaagtctggc
gtgcgcatcttctcgcgcaacgggcacgactggacggaccgtttcgcgccgctcgtccgc
ccgctggagcgtctcgactgcgacacggcgctgatcgacgcggaggtgaccgtcggcgcg
ggtctttacggcttcggtgcgcttcagcgcgcgatttcggcgggtgggcctttcacgctc
aacgccttcgaccttctctggctcgacggcaaaagccttgtgtcccagcctcttgacgct
cgacgcgacgctctggaaggtctcttcgacgacacaccgccccttggccggcttcaactc
tcgcccgtcctgcgaggcgatgccgacggcgcgttccagtcgatctgcgacaccggcggc
gagggcctgatctcgaagcgcatcgacgccccctatcgcggcggacgctcgacggtctgg
cagaagatcaagtgcatcaaacgcgacgaattcgtcatcctcggctggcaggcgtccgac
aagcgcgggcggcccttcgcctcgctcctcctcggtgtcgaggatgccgggggctgggtc
tatgtcggcaaggtcggcaccgggtgggacggagagactgccgacgatcttgccgcgaag
ctgaagccgctcgcccgcaagtctgcgcccgtggacgtcgaggcggcggaagcgaagggg
gtaacatgggtgacgccccgcctcgtcgccgagatccgctatgccgagacgacggatcag
ggccgcctgcgtcacgcgactttcatcgggctgcgcgacgacaagccgccagcgcaggtc
gtgcgtcccgccgcggcgcgcctcgtggcgaaggacgccatcaccgtttcgggcgtcgcc
atcagctcggcggaccgggtcgtctttccgaagcccaaggtcacgaagggcgacgtcgcg
gactactacgcccaggtcgccgagcggatgctcccggacatggccgaccggccgctgtcg
ctggtgcggctaccggaggggctgggcggagagtcgttcttccagaagcaccgcggcaag
ggctttcccgacgccatccgatctatcccgattcccgaaaagaacggcggtgtcgaggac
tacatgaccatcacgacggccgaaggccttgtcggcgcggctcaggtcggcaccatcgag
ttccacatctggggctcgcggcgggaccggctcgagcgcccggaccgcatggtcttcgac
ctcgaccccgatgagggtctcgggtttgccaaggtgcggaaggccgccttcgacgtgcgc
gacaggctggaaagtctcggcctgccgtcctggccccttctgaccggcggcaagggaatt
cacgtcgttgttcccctgcgccggacggcggactggccggccgtctccctcttcgcccgc
accttcgccgcgcatctcgccgccgctgaaccgaagcgcttcgtcgccaccatgtcgaag
gccaaacgcgaggggcgcatcttcatcgactggatgcgcaacgagagaggatcgacggcc
atcgctccgtggtcgcttcgggcgaggccgggcgcgcccgtcgcagtccccgtgacctgg
gacgaactgccttcgttccgccgtgcgaatggcgtgtcgatccgcgaggcactcgaccgc
cccgtgcccgaccggccggaacccgccacactgaatgcccgcgtcgtcgagcggcttgaa
gcctgggtctcggaccgatga
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