Salvelinus sp. IW2-2015 (Arctic char): 111951961
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Entry
111951961 CDS
T05762
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
salp04121
]
111951961
Ubiquitin system [BR:
salp04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul2 complex
Target recognizing subunit
111951961
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
111951961
NCBI-ProteinID:
XP_023826102
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Position
LG25:12237542..12269926
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AA seq
1982 aa
AA seq
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MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRMRAVKDPLQIGFHLSATVVSPQAGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMLKRRDSNAAPLLE
ILTEQCLTYEQIIGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPHRRLELAAQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLPGITYCSADKKSASFCWARAVQQQRGAKAGLAGDPPEPGGGRSGSSEGGGGDYKGRSP
QQEVAVRPKETIVSKRKGLSAGGGGGVLVRLGGSVSLSLEEGSSKGMYKGAGSSSSTGGK
AKIAQGGKSSSGGSGVVGGKHQAAKRRTSSEDSSLEPDMAELSLDDGSSLALGAEASNTF
DFMPPPPEMLPSPSPLLREPHKYSGGGKGAGNTPKERAFEGKRVTLAATLPATEPQPAFP
TKENAAVIVEAAITVEKVVNVEAEMNGNEEAAIAGDARPSTSVVTVTAAAAKSPRGARRE
TGTEAVALPNQAPEGAAEAGAGGDPVGEDDYQAYFLNSANEEGAERVSENNNEEEPDIFA
GIKPLEQEGQMEVLFACAEALHAHGYSNDACRLAVELAGDLLANPPDLKVEQPQTKGKKS
KVSTSRQTQVATNTLVKTSFLLTVLSERLELHNLAFSTGMFSLELQRPPASTKALEVKLA
YQESEVVALLKKIPLGLVEMTSIRDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVCT
VVSPTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLAL
ALMITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAASSQRSPSKHATHTAHGH
GGATGGVSKHAPNTTAAAGSSSSLQAVAAGGAAGQQAGLAGSGVQNNSTAGECVSEAREQ
ADGVQPASCDQPSEAVPFKPEGTVPSRLALGGRGAYSGRCWGSPVRQKKKHTGMASIDSS
APETTSDSSPTLSRRPLRGGWAAASWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGARA
KSTDTSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGG
HQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVEC
WDGHLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQVH
VRYSSVLQKTHRTTHDNVMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGGS
GAQREGPGRCGANGGAGRRPPETGHGVMDNIGNMDSSGVATVTASVTAAAVVPVISVGST
IYQSHALPGSAMAHPHTQGLHPYTTIQAHLPTVCTPQYLGHPLQHVPRPTVFPVSGGAYP
QCVCVPSQGMHPAFIGAQYPFSVATGPHPPMAATAVTFPGVPVPSMTQIAVHPYHTETGL
PLSTTVAGAASFSPFYPVGGVHSGATIQAIQGSSLPGMSSQPVSLVSAPFPSEDEQHSQP
ISQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNYV
YQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHR
LIHLTPADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATF
SP
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atggaactaatgttcgccgagtgggaagacggagagaggttctccttcgaagattctgac
cggttcgaggaggactcgctctgctccttcatatcagaggctgagagtctgtgtcagaac
tggaggggatggagaaaacagtctgctggaccaaattctcctacagtgaagattaaagat
ggtcaggtcatccctctggtggagctatcagccaagcaggtggcattccacatcccgttt
gaggtggtggagaaggtctaccctcctgtccccgagcagctgcagctccgcatcgcctac
tggagcttcccagagaacgaggaggacatccggctgtactcgtgtctggctaacggcagc
cctgatgagttccagcgaggggagcagctgtacaggatgagggctgtcaaagaccctctg
cagataggtttccacctcagtgccaccgtggtgtcgccccaggctggccaatcaaaaggg
gcgtacaatgtggctgtcatgttcgaccgctgccgcatcacttcctgcagttgcacctgt
ggagccggggccaagtggtgcgcccatgtggtggccctctgcctcttcaggatccacaac
gcgtctgcagtgtgcttgcgagcccccgtgtcagagtccctgtcccggctgcagagggac
cagctgcagaagtttgcccagtacctcatcagtgagcttccccaacagattttgcccaca
gcccagaggctcctggatgagctcctgtcctcccagtccacagccatcaacacagtgtgt
ggggctcccgaccccactgctggcccctcagcctctgatcagagcacctggtatctagat
gagtctacgctcagtgacaacatcaagaagactctgcacaagttctgtggcccctctcct
gttgtcttcagtgacgtcaactccatgtacctgtcatctacggagcctccggcggcggca
gagtgggcgtgtctgctgaggccgctgagggggcgggagcccgaggggatctggaacctc
ctgtccatcgtcagggagatgctcaagaggagagacagcaatgctgcacccctactagag
atcctcactgagcagtgtctcacttatgaacagatcattggctggtggtacagcgtgcgt
acgtcggcatcccacagcagtgccagcgggcacacggggcgcagtaacgggcagtcggag
gtggcagcccacgcctgcgccagcatgtgtgatgagatggtcgttctgtggaggctggct
gtcctagaccccaccatgagccctcataggcgtttggagctggctgcccagctcaagcag
tggcatctgaaagtgattgagatcgtgaagcgaggacaacaccgcaagtccctggacaaa
ctgttccagggcttcaagccagccgtggagtcctgctacttcaactgggaggtggcctac
ccactgccaggcatcacctactgcagtgcagacaagaagagcgcttccttctgctgggcc
agggcagtgcagcagcagagaggggccaaggctggcctggctggagacccccctgaacct
ggaggagggagatctggcagttctgagggaggtgggggagactacaagggcagaagtccc
caacaagaagtggcggtcaggcccaaagagaccatcgtgagcaagaggaaggggttgtcg
gccgggggcggaggaggggtcctagtgcggctagggggcagtgtgtctctctctctagag
gagggcagtagtaaggggatgtacaaaggcgcaggttcctcctcgtccactgggggcaag
gctaagatagcccaggggggcaagtcgtcctctgggggatcaggagtggtagggggaaaa
caccaagcggccaagcggcgcaccagcagtgaggacagctccctcgagcctgacatggcc
gagctgagcctggatgatggctccagtctggcgctgggtgctgaggccagcaacaccttt
gacttcatgcccccgccgcctgagatgctgccctcaccaagcccgctactcagagagcca
cacaaatacagtgggggagggaaaggggccggaaacacgcccaaggagcgcgccttcgag
ggcaaacgggtcacccttgctgccaccctgcctgccactgagccccagcccgctttcccc
accaaagagaacgctgctgtcatcgtggaagcagccattaccgtggagaaggtggtgaat
gtggaggcggagatgaatggaaatgaggaggcggccatcgctggagacgctcggccctcc
acctcggttgttaccgtgactgcagctgctgccaagtcaccgcgtggtgcccgccgagaa
actggcaccgaagccgtagccctgcccaatcaggccccagagggagcagcagaagcaggg
gcaggaggagaccctgtaggagaggatgactaccaggcctactttctgaattcagctaat
gaggagggggcagagagagtgtcggagaacaacaatgaggaggaaccagacatctttgct
gggatcaagccactggagcaggagggccagatggaggtgctgtttgcgtgtgcagaggcc
ctccacgctcacggctacagcaacgatgcctgcagactggcagtggagctggctggagac
ctgctggccaaccctccagacctgaaggtggagcagccccagaccaagggcaagaagagc
aaggtgtccaccagcaggcagacccaggtggccaccaacacgctggttaagacctccttc
ctgctgacggtgctgagcgagaggctggagcttcacaacctggccttcagcacgggtatg
ttctctctggagctgcagaggcccccagcctccaccaaggccctggaggtcaagcttgcc
taccaggagtcagaggtggtggctctgctgaagaaaatccctctgggcctggtggagatg
acgtccatacgggacagggccgagcagctccgagacgggaacttctgtgactacaggccc
gtcctgcccctcatgctggccagcttcatatttgatgtgctgtgtaccccagtttgtaca
gttgtgtcccccacaggttcccgtccgcctagccgtaatcggaacaacgagatgcctgga
gatgaggagctgggctttgaggcggctgtagcagcactgggtatgaagaccacagtgagc
gaggcagagcatcctctgctgtgtgaggggaccaggagagagaaaggagacttggctctg
gccctcatgatcacatacaaggatgaccagagcaagctgaaaaagatcctggacaagctg
ctggacagagagagccagacccacaagccccagaccctgagctccttctactccagcaag
ccagctgccagcagtcaaaggagcccgtccaagcacgctacccacactgctcacggacac
ggaggtgccaccggaggggtgtccaaacatgcacccaacaccacagctgcagccgggtcc
tcctcctccttgcaagcggtggctgctgggggggcggcaggacagcaggcgggtctggcg
ggcagtggggtgcagaacaactccacagccggagagtgtgtcagtgaggccagagagcaa
gcagatggcgtccagcctgcgtcatgtgaccagccgagtgaggctgtcccattcaagcca
gagggcacagtgccgagccgcttggcgctgggaggacggggggcatacagcgggcgctgc
tggggctctcctgtccgccagaagaagaaacacacaggcatggcgagtatcgacagcagt
gctcctgagaccacctcagacagctcccccacccttagtcgacgcccactcagagggggc
tgggccgcagcttcctgggggaggggccaagacagtgacagcatcagcagctcctcttct
gattcgctaggctcctcctcatccagtggctctcgcagggccggaggcggagctagagca
aagagcacagacaccagcaggtataaagggcgtcgtcccgagtgccatgcaccacatgtg
cccaaccaaccgtcggaggcggcggcccacttctacttcgagctggccaagaccgtgctg
atcaaggccgggggcaacagctccacctccatcttcacccagccctcagccagtggaggc
caccaggggccccaccgcaacttgcacctctgtgcctttgagatcggcctgtacgcccta
ggcctgcacaactttgtctcacctaactggctctccaggacctactcctcccacgtctcc
tggatcacaggccaggccatggagatcggcagtgctgccctcaacatcctggtggaatgc
tgggacgggcacctcacccctcccgaggtggcatcactggccgacagagcatcacgggcg
cgggatcctaacatggttcgcgctgcggctgagctggccctaagctgcctgccccatgca
cacgccctcaaccccaatgagatccagagggccctggtgcagtgcaaggaacaggtacat
gtccggtactcttcagttctgcagaagacacatcggactactcatgacaaygtgatgcta
gagaaagcctgtatggctgtagaggaggcagccaaggggggcggtgtgtaccctgaggtt
ctgtttgaggtggcccaccagtggtactggctctatgagcagacagtaggaggggggtca
ggggcccagcgtgaaggcccgggacgctgtggggccaacggtggagctggaaggaggccc
ccagagacgggccacggtgtaatggacaacattggcaacatggattcctccggcgtcgct
acggtgacggcctcagtgacagcagcggctgtggtgcccgtcatctctgtgggctccacc
atctaccaatcacacgcccttcccggctcggccatggcccacccccacacccagggcctg
cacccctacaccaccatccaggcccacctacccacagtctgcaccccccagtacctgggg
cacccactgcagcacgtcccccggcccactgtattccctgtgtcagggggtgcctaccca
cagtgtgtctgtgtgccctctcagggaatgcacccggcctttatcggtgcccagtacccg
ttctcagtggccaccggcccccatccgcccatggcagcgacagcagtcaccttccccggt
gttcccgtgccgtccatgacccagatcgccgtccacccctatcacaccgagaccggcctg
cctcttagcaccactgtagcaggagccgcatctttttcccctttctatccagtaggtggc
gtccattcaggtgccacaatccaggccattcaggggtcatctcttcctggaatgtcttct
cagcctgtctcattggtcagcgcccccttcccgtctgaagacgagcagcatagccagcca
atcagccagcagggccttcactacctgcactcagcatacagagttggcatgctagctttg
gagatgcttggcaggagggctcacaacgaccaccccaataacttctcccgcagcccccca
tacacagaggacgtcaagtggctcctgggcctggctgcacggctaggcgtgaactacgtg
taccagttctgtgtgggtgcggctaagggcgtgctcagccccttcgttcttcaggagatc
atcatggaggctctccagagactgaaccccgcccacatccatgcccatctccgcacgcct
gccttccaccaactggtgcagcgctgccagcaggcctacctacagtacatccaccaccgg
ctgatccacctgaccccggccgactacgacgactttgtcaacatcatccgcagcgcccgc
ggggccttctgcctgacccctgtgggcatgatgcagttcaacgacgtgctgcagaacctg
aagaggggcaagcagaccaaggagctgtggcagcgcatctctctggagatggccaccttc
tccccatga
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