Salvelinus sp. IW2-2015 (Arctic char): 111978177
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Entry
111978177 CDS
T05762
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111978177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111978177
03016 Transfer RNA biogenesis [BR:
salp03016
]
111978177
Enzymes [BR:
salp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
111978177
Messenger RNA biogenesis [BR:
salp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
111978177
Transfer RNA biogenesis [BR:
salp03016
]
Prokaryotic type
tRNA degradation factors
111978177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KRR1-like_KH2
Motif
Other DBs
NCBI-GeneID:
111978177
NCBI-ProteinID:
XP_023863859
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All DBs
Position
LG18:complement(45532865..45541557)
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AA seq
779 aa
AA seq
DB search
MYNVSFYLNMRHLLRLGPSLARLNVRLCHQSVWNSHGTIRKVRVDFGEKKLEISTGKLAR
FADGSAVVQLGDTTVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNHLRRELGTTE
NEILTSRLIDRAIRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINGASAALSLSDIPWN
GPIGAVRIGLVNGEFLVNPTRKEMASSTINLIVAGAPLSQVVMIEASAENVLQQDFCHAV
KVGVKHTQQIILAIQQMAREAKVSKRTPPKIFSAPLEMIELARQLASEKVYAVFTDFTHD
KISRDDAINKVRLETEEQIKEKYPQAEPYEVMESFNMVSKEVFRNLVLNEYRRCDGRDLT
SLRNISCEADIFKPLHGSALFQRGQTQVLCSVTFDSLESSIKTDIITTALSGVKDKNFML
HYEFPPYATNEIGKMSGMNRRELGHGALAEKSLRPVIPKDFPFTIRVTSEVLESNGSSSM
ASACGGSLALMDAGVPISSAVAGVAIGLISKANPEKPSEIQDYRILTDILGIEDYLGDMD
FKLAGTNKGINALQADVKIPGLPLKLVMEAIQQATVAKREILGIMNKTIAKPRDKRKENG
PVVENVRVPVSRRARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPGAMNEAQEFI
TEICKDDQEQLLEFGAVYTATIMEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALG
LEVGQQIQVKYFGRDPTDGRMRLSRKVLQSPAATVVKTLSEKQSISMGTGDGQATSTSS
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgtataatgttagcttttacttgaatatgagacatttactgagacttgggccctcgctg
gctcgactaaatgtgcggttgtgccaccaaagcgtctggaacagtcatggaacgatacga
aaagtgagagtggacttcggtgagaaaaaacttgagatctcaacagggaaacttgccaga
tttgcagatgggtcggctgttgtgcagcttggggatacaacagtgatggtgacagctgtc
agcaaaacaaaaccatccccctcccaatttatgcctttagtggtggactacaggcaaaaa
gcagctgctgctggtagaatccccactaaccacctgcggcgggagttgggcaccactgaa
aatgagattctgactagtaggctaatagacagggcaatcagaccgctttttccagctggt
tatttctatgacactcaggtcctgtgtaacctgttggcagttgatggtgttaatgatcca
gatgtactggccattaatggagcctctgctgctctatccctgtctgacattccctggaat
gggcccattggtgcagtgcgcattggcctggtgaatggagagtttctggtgaacccaaca
cgaaaggaaatggcttccagcactatcaacctgatagtggctggagcaccgctcagccaa
gtggtgatgatagaggcttctgctgagaatgtgttgcagcaggacttctgtcatgcagtc
aaggttggtgtgaagcacacacagcagatcatactggcaattcagcagatggccagagaa
gcaaaggtgtccaagcgcactcctcccaaaatattttctgctcccctggaaatgattgag
cttgcgcgacagttggcctctgaaaaggtctatgctgttttcacagacttcactcatgac
aaaatttccagagatgatgccattaataaagtaaggcttgaaacagaggaacaaataaaa
gagaaatatcctcaagctgaaccttacgaggtgatggagtccttcaacatggtatcaaaa
gaggttttccgcaatctggttttgaacgagtacaggaggtgtgatggaagagacctgact
tcattgagaaatatttcctgtgaggcggacatctttaagccccttcatgggtctgcactt
ttccagaggggacagacacaggttctgtgctctgtaacatttgactccttggagtctagt
attaaaacagacatcattactacggcgttaagtggagtcaaagacaagaatttcatgctt
cactatgagtttccaccttatgcaaccaatgagattggaaagatgagtggaatgaacaga
agagagcttggtcatggggcactggctgagaagtctttgagacctgtcattcccaaagac
ttccccttcacaattagagttacctctgaggttctggagtctaatgggtcctcgtctatg
gcatcagcatgtggaggcagtctggctttgatggatgctggtgttcctatttcatcagct
gtggcaggtgttgctattggactcatatccaaggcaaacccagagaagccatcagaaatc
caggactaccgaatattgactgatattctgggaatagaggattacctaggagacatggac
ttcaaactggcaggaacaaacaagggtatcaatgccttacaggctgatgtgaagattcca
ggcttacctctgaaacttgtaatggaggctattcagcaagccacggttgccaagagggag
attttgggcatcatgaacaagaccattgccaagccaagggataaaagaaaggagaatggt
ccagttgtcgagaatgtcagagtccctgtctctagacgagcacgctttgtcggaccaggg
ggatataacctccgcagactacaagctcaaacaggtgtgacgataagccaggtggacgag
gagaccttctctgtgtttgcacctactccaggtgccatgaatgaagcccaggaattcatc
acagaaatctgcaaggatgatcaagagcagctgctggagtttggtgctgtttacactgcc
accatcatggaaataagggacattggtgtcatggtgaagctatatcccaacatgagtgct
gttctgctccataactctcagctggaccacaaacggataaaacacccaagtgctcttgga
ttagaggttggacagcagattcaggttaaatactttgggcgagacccaacagatggtaga
atgaggctttcgaggaaggtgttacaatctccagcagcaacagttgttaagacactgagt
gagaaacagagcatctccatgggcacaggggatggccaagcgaccagcacctcctcttga
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