Salvelinus sp. IW2-2015 (Arctic char): 111981923
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Entry
111981923 CDS
T05762
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
111981923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111981923
03036 Chromosome and associated proteins [BR:
salp03036
]
111981923
Transcription factors [BR:
salp03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
111981923
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
111981923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
C5HCH
Motif
Other DBs
NCBI-GeneID:
111981923
NCBI-ProteinID:
XP_023869183
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All DBs
Position
LG20:complement(48901887..48941840)
Genome browser
AA seq
1990 aa
AA seq
DB search
MSSEMLSVPPGTSKLDVLVTKLHEFLAHAPEDDENRLVTESPDGMTNKDCVEPHSTDRTP
LEPQQTSTDTLKQSGCGSRRKPSVVIKHSGLDESGASNESDDDDDGLIINSNGYPDVTRL
PKGTVLVRPEPVENVRDDFRGPEFRCGKSGNLKRAFSRRRGGGEHLEIVSCTACGQQVNH
FQRDSFYQHPVLKVLICKSCFKYYSSDDISKDCDGMDEQCRWCAEGGNLICCDFCPNAFC
KKCILRNLGRKELSGILDEESKWYCYVCSPEPLLDLVVACDNVLDNLGHLWPDHRKRGRG
EGKSGHYDSHPRHSQNIPVGHWNHSGMDGHVVFNYNTLQIPEEMAKKAKNLVDSTNTVNT
TFVKFIQGGMQQKQTTELKLQYLKTFQSVLKGLKKSQTALEEALLEEFREMGLPNGGENP
TFDDTDVPQQEQEGCVEIDISDKNGLHYLKKIAAEHLEDNDSDSNGFMDDGRPSSSIEMK
GVLGTEIIPRRGRGRPRKNSKPGEDACNVTKQLVVQISPAPVEQEPLSGPPELEVEVELE
AEEEERKEKVEEREGDCESIELVTEGEYESAEGSESLELEEEPDNRRSPRVKTTPLRRPG
EGKTQPTPSGADSESDSDPDTSPNAEVPQGADEGGLGRGTDDSDSDEVPAVLQRAAMTRS
SDEAESDDGDHRSVTKKCLFGLKKNTPLSPERVVRKRKVPDRSSDSDSSSDDPDLQKEIK
TMTRPRGRPRKVKREDEPTPSKDSPQHRPRGRPRKVKKEDESTSSKEGNTQAAKPQSTPQ
SEHRTKQTPSSSSQEEGDLDSESSDDSGDQKIKPITEEVALLGAAAFHQSSGDEEQPQSG
PSWAAEDDDDPENRIAKKMLLAQIKANYSSGEDFSSDVESSHDDESDREEKEQEDGKDES
SDENGETSSLTSDSESSKTRHRHRLLRHKLSLDNGNPIDQKTAEENGIEQKVRKSRRTKG
EKLDNQSSDDDSQSQQEESGMSEELSQSENEGNEQMLKSSTSSTSRVERESVRSYLQKKQ
QPSYIVLSDSSVDKSDDEEKDGEEGDNKDTPKGRKKIRRIIVDEHLRSETQRALKEEEER
RRRLAEREQREDFREVIVIEDEASHVACPITTKLVLDQDEGTKEPLIQVHRNLVTRLKPH
QVDGVQFIWDCCCESVKKANSTPGSGCLLAHCMGLGKTLQVVTFLHTMLQSKCMNFRTAL
VVCPLNTILNWVNEFEKWQVDMGADKVKVTELATLKRPQERYFALQRWQMDGGVMIMGYE
MYRNLTLGLKVIHGKFKKTFDSTLVDPGPDFVICDEGHILKNEASNISKAMSAIKTKRRV
VLTGTPLQNNLNEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTPRDVRIMKNRA
HVLHAMLAGCVQRRDYSALTKFLPPKHEYVMAVRVTPLQYRLYCYYLDNFTGARSVVEGA
RGKAGTSLFKDFQILSRIWNHPWCLQLNYISKENKGHFDGKHQGKTERCVSMSIQKEKEN
KGKVVNADEDSKDVEVILVWNSTSKGVDVEGDQRAGPLVPVVKALRASTSFRPDSPAADW
YKSMLSDSDATILGHSGKMVLLFEILQMAEELEDKVLVFSQSLITLDMIEDFLDLTNKAK
NNRQSSLYKGDGSWIRNTDYYRIDGSTSATSRMKWVQDFNDATNKRGRLFLISTRAGSLG
INLVAANRVIIFDASWNPSYDIQSIFRVYRFGQLKAVFVYRFLAQGTMEEKIYDRQVAKQ
SLSFRVVDQQQIQRHFTLFELTELYMFEPDLLDDPNSEKKSKRTTPLLPKDMVLAELLQS
CKGQIVCYHEHESLLDHKEEEELSEADCKTAWAEYEAEGAFFLNKAEHSNTNVPSPSTST
MAVSLSSLYKKTNGQLKNMIYSSCEKVNEAIKSLHSLLNLSLDDYVLRLWQDNPSLDEKQ
VRAVAQTWKTSNDKERERRQAIHRDLLAKQQSLTMYIQTILASRKNEITHTATVTNHTPA
LTDSANKPTQ
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagagatgctcagcgttcctcctggcacgagcaagctcgatgtgttggtgacc
aaactgcatgaattcttggctcatgctccagaggatgatgagaacagactggtgacagaa
agtcctgatggtatgacaaacaaggactgtgtggagccacactcaacagaccgaacccct
cttgagcctcaacagacctcaacagacaccttgaagcagtctggatgtggttccaggaga
aaaccttcagttgtgattaaacacagtggactggatgaatctggtgcttcaaatgaaagt
gatgatgatgatgatggcttgatcatcaattcaaacggttatcctgatgtaacaagatta
cctaaaggcactgtactggtgaggcctgagccagtggaaaatgtcagagatgacttcaga
ggtcccgaattccgttgcggaaaatctggcaatctgaagagagctttttctaggagacgt
ggaggtggtgaacacttggagattgttagctgtacagcctgtggccagcaagttaaccac
ttccagagggactccttctatcagcatccagtactcaaagtacttatttgtaagtcttgt
ttcaagtattactcaagtgatgacatcagcaaggattgtgatggcatggatgaacagtgc
agatggtgtgcagaggggggaaacctgatctgctgcgacttttgccccaacgccttctgt
aagaaatgcattttgcggaacctggggcgaaaagagttgtctggcatcctggatgaggag
agtaagtggtactgctacgtatgcagcccagagcctcttctggacctggtcgtcgcttgt
gacaacgtccttgacaacttggggcatttgtggccagaccaccgcaagaggggcagaggc
gagggaaaatctggacattatgactcccatccaaggcattctcaaaacattcccgtgggt
cattggaaccatagtggcatggatggtcacgttgtgttcaactacaacacccttcaaatt
ccagaggagatggccaaaaaggcwaaaaacctggtggactctacaaacaccgtaaacaca
acttttgtgaagtttattcaaggtggcatgcagcagaaacagacaaccgagttaaagcta
caatacctgaagactttccagtcagtactgaagggtctgaagaagtctcagacagctctg
gaggaagcccttttggaggagttcagagagatgggtttgccaaatggtggtgaaaacccc
acgtttgatgatactgatgtacctcaacaagaacaagagggttgtgtggaaattgacatt
tctgataagaatggccttcattacttaaagaaaattgcagctgaacatttggaagacaat
gattcagactcaaatggctttatggatgatggaaggccttcgtcctcaattgaaatgaaa
ggtgtccttggcacagagataattccccgacgaggtagaggcaggccgcggaaaaactca
aagcctggagaagatgcttgcaacgtgacaaaacaactggtggtgcaaatttcacctgcc
cctgttgaacaagagccactctctggccccccagagttggaggtggaagtggagttggag
gcagaggaggaagagagaaaagaaaaagtggaggaacgggagggagactgtgaatctatt
gaacttgtaacagagggggagtatgaatctgctgaaggaagcgaatctctggaactggaa
gaggaaccagataatagacgctcacctcgggtaaagaccacacccttgcgcaggccaggt
gagggcaagacccagccgaccccctcgggtgcggacagtgagagtgactcggaccctgac
accagccccaatgctgaagtgcctcaaggagctgacgagggagggctagggagaggaact
gatgactctgactccgatgaggtcccagctgtcctccagcgggccgccatgacgcgcagt
tcagacgaagccgagagtgacgatggagaccatcggagtgtgaccaagaaatgcctcttc
ggcctgaagaagaacacacccctctctccagaaagagttgtccgcaaacgcaaggtgcca
gaccgctcctctgactctgattcctccagtgacgatccggacctgcagaaggagatcaag
actatgaccaggcccagggggaggcctcggaaggttaagagagaggatgaacctaccccc
agcaaggatagtccgcaacataggcccaggggcagacctcggaaggtcaagaaagaggat
gaatctacatccagcaaggagggtaatacccaggcagccaagcctcaaagcacacctcaa
tctgagcatagaacgaagcagacgccatcctcttccagtcaagaagagggggacctggac
tctgagtctagcgatgacagtggtgaccagaagatcaagcctatcactgaggaggtggcc
ttactgggggcagcagctttccaccagtcatccggcgatgaagagcagccccagtctggg
ccttcttgggcagcagaagatgatgacgatccagaaaatagaatcgctaagaaaatgctc
ttggcccaaatcaaagccaactactcatcgggggaggatttctcttcagacgtggagtca
tcacatgatgatgagtctgacagggaagagaaggagcaagaagatgggaaagatgaaagc
tccgatgagaatggggagacttccagtttgacctctgactctgagtccagtaaaacacgt
cacagacatcgtctgctacgccacaagctcagccttgacaatggaaatccaattgatcag
aaaaccgctgaagaaaatgggattgagcagaaagtcaggaagtctagaagaaccaaaggt
gagaaattggataaccagagtagtgatgatgatagccaatcacagcaggaagagtctggt
atgagtgaagagctgagccaatcggagaacgagggcaatgaacagatgctcaaaagctct
acatcatctacctctagagtcgagagggaatcagtccgtagttatctacagaagaagcag
caaccctcatatattgtgctgtctgactccagtgtcgataagagtgacgatgaagagaag
gacggcgaggaaggggacaacaaagatacacctaagggccgcaagaagatccgcaggatc
atcgtagacgagcacctccgctcggagacccagagagccctgaaggaggaggaggagaga
cgragacgcctggcagaaagagagcagagggaggacttcagagaggtgattgttattgag
gatgaggcgtctcatgtggcctgtcccatcaccactaagctggtcctggatcaggatgag
gggacaaaggagccactcatccaggtgcacaggaacctggtgaccaggctcaagcctcac
caggtggatggtgtgcagtttatctgggactgttgttgtgagtctgtgaagaaggccaat
tcaacccctggatcaggctgcttactggcccactgcatgggcctagggaagacactgcag
gtggtgacatttctccatacgatgctgcagtcaaagtgcatgaacttcaggactgccctg
gtggtgtgtccactcaacaccatcctcaactgggtcaatgagtttgagaagtggcaagtt
gacatgggagctgacaaagtcaaggtgacagagttggccacactgaagcgaccacaggag
cgttattttgccctgcagagatggcagatggatggtggtgttatgattatgggctatgag
atgtaccgtaacctcacactaggcctcaaagtcatccacggaaaattcaaaaagaccttt
gacagtactctagtcgatccaggtccagactttgtgatctgcgacgagggtcacatcctg
aagaacgaggcatccaacatctctaaagctatgagtgccattaagaccaaacggagggtg
gtgctgacaggcacaccactgcagaacaacctcaatgagtaccactgcatggtcaacttc
atcaaggaaaaccttctgggctcaatcaaggagttccggaatcgctttatcaaccccatt
caaaacggccagtgtgcagactccacccccagagatgtccgcatcatgaagaatcgcgcc
catgtccttcatgcaatgttggcagggtgtgtacagagaagagactactcagccttgacc
aagttcctgcccccaaaacatgaatatgttatggcagtgagggtgacccctctccagtac
agactgtattgctactacctggacaacttcactggagctaggtctgtggttgagggagcc
aggggcaaagccggaaccagccttttcaaggacttccagatactcagccggatctggaac
catccctggtgtctgcagctcaactatatcagcaaagaaaataagggccattttgatggg
aagcaccaggggaaaactgagaggtgtgtaagcatgagtattcagaaagagaaggagaac
aaggggaaagtggtgaatgctgatgaagacagcaaggatgtggaggtgatcctggtgtgg
aacagcacatcaaagggtgtcgatgtggaaggagaccagcgagcaggtccactggttcca
gtggtaaaagcgttgagagcgtccaccagtttcaggcctgacagtccggctgcagactgg
tacaagtcaatgctgagtgactctgacgccaccatcctgggacactcagggaagatggtg
ctgctgtttgagattctccaaatggcagaggaactggaagacaaagtgttggtgttcagt
caatccttgatcacattagacatgattgaagatttcttggacctcaccaacaaagccaaa
aacaacaggcaatcatccctatacaaaggtgatggcagctggatcagaaacactgactat
taccgtattgacgggtccaccagcgccacatccaggatgaaatgggtgcaagatttcaat
gatgccaccaacaagcggggtcgtctgtttctcatctcgacaagagctgggtcccttggg
atcaacctggtagcagctaacagggtcataatttttgacgcttcgtggaatccctcctat
gacatccagagcatcttcagggtgtaccgttttggccagctgaaggctgtgtttgtctac
cgcttcttggctcagggcaccatggaggaaaagatctacgaccggcaggtggccaagcaa
tcactgtcgttccgggtggtggaccagcagcagatacagagacacttcacactgtttgaa
ctgacggagctctacatgtttgagccagacctgctggatgaccccaactctgagaagaag
agcaagaggaccacaccgctgctgcccaaggacatggtgctggcagagctgctgcagagc
tgtaaggggcagattgtctgctaccatgaacacgagtccctgctggaccacaaagaggag
gaggagctcagtgaggctgactgcaaaactgcctgggctgagtacgaggcagagggtgct
ttcttcttgaacaaggcagaacacagcaacaccaacgttcccagcccctccacctccact
atggctgtcagtctgtcatccctgtacaagaaaactaatgggcagctgaagaacatgatt
tattctagctgtgagaaggtcaacgaggccatcaagtccctgcattccttactgaacctc
tccctggatgactatgtgttgcgcttgtggcaagataacccaagtctagatgagaagcag
gtgagagctgtggcccagacctggaaaaccagcaatgacaaggagcgggagcgacgacag
gccatacatcgcgaccttcttgcaaaacaacaatcacttacaatgtacatccagaccatt
ttggccagtagaaaaaacgaaattacccatactgccacggtcaccaatcacacaccagct
ctgacagattccgccaataaacctacacagtga
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