Snodgrassella alvi: SALWKB2_0348
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Entry
SALWKB2_0348 CDS
T03063
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
salv
Snodgrassella alvi
Pathway
salv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SALWKB2_0348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salv03400
]
SALWKB2_0348
Enzymes [BR:
salv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SALWKB2_0348
DNA repair and recombination proteins [BR:
salv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SALWKB2_0348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_22
DUF374
Motif
Other DBs
NCBI-ProteinID:
AHN27730
UniProt:
X2H5M3
LinkDB
All DBs
Position
complement(419835..423461)
Genome browser
AA seq
1208 aa
AA seq
DB search
MSQALNPITMPLNGSSLIEASAGTGKTFNIAALFARLVLLERMPVDAILVVTFTKAATAE
LKTRLRTRLNQALALLQNNLPAEQNDPVLQQLIDCARSQDDDASLILRLQAAITQFDRAA
VYTIHGFCQRVLTDYAFLCQTPFDTETIETDPEMLCRFAEDFWRQQVSNNSSMATLAVAY
KLTPARLMQEMGRHCGMVDLQVRQPPVADIAGINNCWQQSWQSVCTHFSLIQDSFWQLHQ
QLNGNIYRQKSYQQLFTDLQQVMESEVNCHSFSSSVLEKCAKLASSQLQENTKKNQTLNN
ELIANIAPLVELAEAVTAMLTAEDSISLQLQLDCFNYVRQCLNQHRRNSHQRSFDDLLAD
LGLALSADNPMSETLAAALAQTWQIALVDECQDTDPLQYRIFKTAFAEQNRPLIMVGDPK
QAIYRFRGADIHAYLRAAADTPPQQRYTLTTNYRSHQALVQAIGHLFSGKKLPFILEGIS
YPQVQAQAENNRLHYSHGNTVIPAVVVRWLHEKIDVSDKGAEIIPNKDSLRTRAAEYCAY
EIAGMINQGMRGELLLSNRPLQAGDIAVLVHSHNEGRMIAGALKRCGIMSVSLGNHSVFS
STEAQAVEALLRFWLQPQRTETLRFILGGVLFGWTAAQLAELNRNENTLSEWIQLALQTR
EQWLHYGIYPAIQWFAGQTGMEIRLLTQRNERSLTNLWQLAELLAAAEQTLPTANALLNW
LTSAIGNERSAGESSLLRLESDEALVKIVTMHASKGLEYPVVFCPFAWDGKETINNQEHW
QRLHQQDKVELIANSLLSDSDRDELECESMAERLRLYYVAFTRAREQLILYTAACNNTAS
NPMAWLLDGQPDNTLKESRQFWQETHKPNLPSTLRAAWHQCLAAGNPELFQWCEGNVDPA
CIDISKKPEQPYRALTPTVRTFQSIRYTSFTSLSRHDYSHRESAPEEEKIAPALDQAEVQ
IQPLSPDTEAETPVLAFERGINAGLCLHAILEQTEFSLPATATEQEHILDCLARYGFDSR
HSATMQTLTDTVRQCQLSPQTIIANIPKAQRVAEMNFMLRVADFSIADLQQWFNHASGLP
QCCVQAAQELDFATVNGFINGAIDLLGEDRHGQVYVIDYKSNHLGNRLSDYTQENMDEAI
ARHHYYLQALVYSIACARFLHSRRQLPPSISVRYLFLRGLNPHNQNGIWKWDIDTASLRP
WLVEHDKV
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcattaaatccgattaccatgcccttaaacggcagcagcctgattgaagct
tctgccggtaccgggaaaacctttaacattgccgccctgtttgcacggctggtgttactg
gaacgtatgccggttgacgctattctggtggtcacttttactaaagcagctacagcggag
ctgaaaacccgtctgcgtacccgccttaatcaggctctggctctgttacaaaataatctg
cctgcggaacagaatgatccggtactgcaacagctgattgactgtgcccgcagtcaggat
gatgatgccagcctgattctccgtctgcaggcggccattacccagtttgaccgtgcagcc
gtttacaccattcacggattctgccagcgcgtactcactgattatgcctttttatgccag
acaccatttgatacggaaactattgaaactgatccggaaatgctgtgccggtttgccgaa
gacttctggcggcagcaggtaagcaataacagcagcatggccactctggccgtcgcttac
aaacttacccctgcccggcttatgcaggaaatgggacggcactgcggcatggtagattta
caggtacgccagccgccggttgcggatatagccggcataaataactgctggcaacagtcc
tggcagagcgtatgtacacatttcagccttattcaggattcattctggcagttacatcag
caactaaatggtaatatttaccgccagaaaagttatcagcagcttttcaccgacctgcag
caggtaatggaaagcgaagtaaactgtcattctttttcttcttctgtactggaaaaatgt
gccaaactggcttcatcccagctacaggaaaacaccaaaaaaaatcaaacactcaataat
gagctgatagctaacattgccccactggtcgaactggcagaagctgttactgccatgctg
actgcagaagacagcatatcactgcaattacagctggactgttttaactacgtgcgccag
tgtctgaatcagcaccggcgcaacagccaccagcgcagctttgacgatttactggcagat
ctgggtctggcactgtctgcggataatcccatgtctgaaacactggccgcagcactggcg
caaacatggcagattgcactagtagacgaatgtcaggatactgatccgttgcagtaccga
attttcaaaaccgcgtttgccgaacaaaaccgcccgcttattatggtgggtgacccgaaa
caggctatttaccgtttccgtggtgctgatattcacgcctatctgcgtgccgctgccgat
accccgccacagcagcgctataccctaactactaattaccgcagccatcaggcactggta
caggccattggccacctattcagcggcaaaaagctgccttttattcttgagggtatcagc
tatccgcaggtacaggcacaggcagaaaataaccgtctgcattacagtcacggcaatact
gttataccggcggtagtggtgcgctggctgcatgaaaaaatagatgtcagcgataaggga
gcggaaattatcccgaataaagacagtttgcggacacgtgcggccgaatattgtgcctat
gaaattgccggcatgattaatcagggtatgcgcggagaactgctactgagtaaccggccg
ttacaggctggcgatattgccgtattggtgcattcacataatgaaggccgcatgattgcc
ggcgcattgaaacgctgcggcatcatgagcgtctctcttggaaaccattcagttttttcc
agcactgaggcacaggctgtcgaggctctgttacgtttctggctgcaaccgcagcgcact
gaaacattacgctttatccttggcggtgtattgttcggctggacagcagcacagctggca
gaactgaaccggaatgaaaatacactgagcgaatggatacagctggcactgcaaacccgc
gaacaatggctgcactatggtatttatcctgccatacagtggtttgccggccagaccggc
atggaaatcagattgcttacacagcgcaatgagcgcagcctgaccaatctgtggcaactg
gccgaattactggctgctgctgaacaaaccttgccgacggccaacgccctgctgaactgg
ctgaccagtgccatcggcaacgaacggtcagcaggtgaaagcagtctgctgcgactggaa
agtgatgaagcactggttaaaattgtgaccatgcatgcttccaaagggctggaatatccg
gtggtattctgtccgtttgcatgggatggtaaagagaccattaataatcaggaacactgg
caacgtctgcatcagcaggataaagtggaattgattgccaatagtttgctcagtgacagc
gaccgggatgagctggaatgcgaaagtatggccgaacgtttgcgtctgtattatgtagcc
tttacccgggcacgcgaacaactgatactgtacactgcagcctgcaacaataccgccagt
aaccccatggcatggctactggacggtcagccggacaataccctgaaagaatcacgccaa
ttctggcaggaaacacataagcccaatctgcccagtactttacgtgctgcatggcatcaa
tgtctggctgccggcaaccctgagctgtttcaatggtgtgaaggtaatgtagaccctgcc
tgtattgatatcagtaaaaaacccgaacaaccttatcgtgcactaacaccgacagtaagg
acttttcaatccatacgctataccagcttcaccagtctgagccggcatgattacagtcac
cgcgaatctgctccggaagaagaaaaaatagcacctgcgctggatcaggctgaagtacag
attcagccgctgagccccgatacagaagcggaaacacctgtgctcgcattcgagcgcggt
atcaacgccggactttgtctgcatgccatactggaacagaccgaattcagcctgccggct
actgcaacggaacaggagcatattctcgactgtctggcacgttatggtttcgacagccgg
cacagcgccaccatgcagacgcttactgataccgtacgccaatgccagctgtcaccacaa
accattattgcaaacatacctaaagcacaacgagtggctgaaatgaatttcatgctgcgg
gttgccgatttcagtatcgcagatttacaacagtggtttaaccacgcatccggattaccg
caatgctgtgttcaggcggcacaggagctggattttgctacggtaaacggatttatcaac
ggggctatcgatcttctaggcgaagaccggcatggtcaggtatatgttattgattacaaa
tccaaccatttgggaaatcgtctgtcagactatactcaggaaaacatggacgaggctatt
gccagacatcattactaccttcaggcactcgtttacagcattgcctgtgcacgatttctg
cacagtcgccggcagctgccgcccagtatcagcgtacgttatctcttcctgcgcggactt
aatccgcacaaccagaatggcatatggaaatgggatatagacacagccagtctcagacca
tggctagtagaacatgacaaagtatag
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