Salmo salar (Atlantic salmon): 100380397
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Entry
100380397 CDS
T04363
Symbol
dpod1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03030
DNA replication
sasa03410
Base excision repair
sasa03420
Nucleotide excision repair
sasa03430
Mismatch repair
sasa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100380397 (dpod1)
03410 Base excision repair
100380397 (dpod1)
03420 Nucleotide excision repair
100380397 (dpod1)
03430 Mismatch repair
100380397 (dpod1)
03440 Homologous recombination
100380397 (dpod1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sasa03032
]
100380397 (dpod1)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
100380397 (dpod1)
Enzymes [BR:
sasa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
100380397 (dpod1)
DNA replication proteins [BR:
sasa03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
100380397 (dpod1)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
100380397 (dpod1)
MMR (mismatch excision repair)
DNA polymerase delta complex
100380397 (dpod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
100380397
NCBI-ProteinID:
NP_001167152
UniProt:
C0HA77
LinkDB
All DBs
Position
ssa06:1518057..1524671, ssa06:8179138..8207571
Genome browser
AA seq
1105 aa
AA seq
DB search
MDAKRRNSGPPRGGASQAKRGKTAGDWEDSPSIFEEELALFEEADMEAEEREGQAGHDVI
PVGELFSADLNPRWRRPQAAPLNPDSDTLVFQQIDLDYYLGAAVAGMPGQSQGNVPIIRM
FGVTDSGNSVCCHVHGFAPYFYIPAPNGFTSDHLSEFKRELNSAVLKDMRSNKDNMSVTV
LAVDITRKETMYGYHGKRIVDFLRITMAMPRLIAPAKRLLEQGFKFGPFPIQSFSSYEAN
IDFEIRFMVDSDVVGCCWIELPKGKYRVRAERKVGETDAHYPGKVSLCQYEVDVGWTQLI
SHPAEGEYQRIAPLRVLSFDIECAGRKGIFPEAEKDPVIQIASMVQRQGEKEPFIRTVFT
LQSCSSIVGSQVLCFTKESQLLQSWAEFVRTVDADIITGYNIQNFDLPYLLNRAATLKVN
LFPYLGRVQGIKSVLRDSSFQSKQMGRRENKILNMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQGLVMPVVKPEGGEDYTGATVIEPEKGYYSV
PIATLDFSSLYPSIMMAHNLCYTTLLQKGSAEKLGLNPEDFIKTPTGDLFVKSSVRKGLL
PDILEDLLSARKKAKAELKNETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEQTKQLVESKYTIANGYQADAKVIYGDTDSVMVKLGVDTVSRAMEVGR
EAAEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSSSADTHDKMDCKGIETVRRDN
CTLVANLINTCLQTILIDRDPQGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAA
KQAHVELAERMKKRDAGSAPQLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTQY
YLEQQLSKPLLRIFEPILGESKAESVLLKGDHTRCKTVLTSRVGGLMAFATRRSACIGCR
AVLKNDAAVCDFCKKKESELYQKEIFHLSTLEERFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLDDQEKLVSRFGW
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggatgctaaaaggcggaatagcggtccgccgaggggcggggcgtcccaggccaagcgt
ggtaaaactgctggggattgggaagacagcccgtcgatcttcgaggaggaactcgccctg
ttcgaagaagccgatatggaggcggaggagagggaaggacaggcagggcatgacgtcatc
cctgttggtgagctgttctctgctgacctcaacccccgatggcgtcggccgcaggccgcc
cctcttaacccggactctgacaccctggtcttccaacagatcgacctcgattactattta
ggggctgctgtggctggcatgccaggtcagtctcaggggaatgtaccaataatccgcatg
ttcggggtgactgacagcgggaacagtgtgtgctgccacgtgcacggctttgccccctat
ttctacatccctgcccccaatgggttcaccagtgatcacctgagtgagttcaaaagggag
cttaactctgctgtgctgaaggacatgcgctccaacaaggacaacatgtcggtcactgtg
ctggcggtggacatcacacgcaaagaaactatgtatggttaccatgggaaacggattgtg
gacttcctgcgcatcaccatggcaatgcctcgtctgattgccccggcgaagaggctcctg
gaacagggatttaagttcggacctttccccattcagagcttctcttcctacgaggctaac
atcgactttgagataaggtttatggtggacagtgatgtggtgggttgctgctggattgag
ctgcccaaagggaagtaccgggtgagggcggagaggaaggtgggggagacggacgctcac
tacccaggcaaggtgtctctgtgtcagtatgaggttgatgtgggatggacccagctgatc
agtcacccagcggagggagagtaccagaggatcgctcctctcagggttctcagctttgac
attgagtgtgctggaagaaaagggatatttccagaggcagagaaagacccagtgatccag
atagcctccatggtgcagcgacagggagagaaggaacccttcatccgcaccgtcttcacc
ctccagtcctgctccagcatcgtgggctcccaggtcctgtgctttactaaagagagccag
ttactacagagctgggctgagtttgtgaggacagtggatgcagacatcatcactggctac
aacatccagaactttgaccttccctacctgctgaacagagcagctaccctgaaggtcaat
ctgttcccctacctgggcagagtacagggcatcaagtcagtcctgagagactccagcttc
cagagcaaacagatgggccgcagagagaacaagatccttaacatggagggacgagttcag
tttgacctgctccaggtgctgctgagggactacaaactgcgctcgtatacgctcaatgcc
gtcagcttccacttcctgcaagaacagaaggaggatgttcagcattctatcatcacagat
ctgcagaatggtaatgagcagacgcggaggcgcctggcggtgtactgtctgaaggatgcc
tacctgcccctgcgtctgctgcagaagctgatgtgtgtgatcaactacatggagatggcc
agagtcaccggggttcccctcacctacctgctctccagaggtcagcagatcaaagtggtg
tcccagctactgcggcaggcaatgaaacaggggctggtcatgccagtggtgaagcctgag
ggaggtgaagactacactggagctacagtcattgagccagagaaaggatactacagcgtt
cccatcgccaccctggatttctcctccctgtatccctccatcatgatggcccacaacctc
tgctacaccaccctgcttcagaagggctcagcagagaagctgggtctgaacccagaggac
ttcatcaagactcccacaggagacctgtttgttaagagctcggtgaggaagggacttctg
cctgatatcctggaggacctgctctctgccaggaagaaggccaaagcggagctgaaaaac
gaaacggatcctttcaagaaacaggtccttgacggccgacagctcgctctgaaaatcagc
gccaactccgtctatggctttacaggggctcaggtgggcaagctgccctgccttgagatt
tcacagagtgttactgggtttggcagacagatgattgagcagaccaaacagcttgtggaa
tccaagtacaccatcgccaacggttaccaagccgatgccaaggtcatctacggggacacg
gactccgtcatggtcaaactgggcgtggacactgtgagcagggccatggaggttgggagg
gaggcggcagagtgggtctcctcccacttcacccctcccatcaaactggagtttgagaag
gtgtactacccctacctgttgatcaacaagaagcgctacgcaggtctctacttctcctcc
agcgccgacactcacgacaagatggactgcaagggtatcgagacggtccgcagagacaac
tgtaccctggtggccaatctgatcaacacctgcctgcagaccattctgatagacagagat
ccccagggtgcggtggcccacgccaaagaggtgatctctgacctgctgtgtaaccgcatc
gacatcagccagctggttatcaccaaggagctgactcgcacagcccaggagtacgctgcc
aagcaggcgcatgtggagctggccgagaggatgaagaagagagacgcgggtagcgccccc
caactgggagacagagttccctacgtcatcatcaaagctgccaaaggagtagcagcatac
atgaagtctgaggacccaatctatgttctggagaacaacattcccattgacacccagtac
tacctggaacaacagctctccaagccactgctccgcatctttgagcccatcctgggagag
agcaaagcagagagcgtcttactgaagggggatcacacgcgctgtaagacagtgttgacc
tccagggtgggggggctcatggccttcgccaccaggaggagcgcctgtattggttgcaga
gcagtgctgaagaacgatgcggctgtgtgtgatttctgtaagaagaaggagtcggagctg
taccagaaagagatcttccacttaagtactctggaggagcgcttctctcgcctgtggaca
cagtgtcaacgctgtcagggctctctccatgaggatgtgctctgtaccagccgggactgt
cccatattctacatgaggaagaaggtgcagaaagacctggatgatcaggagaagctggtg
tctcgctttggatggtga
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integrated database retrieval system
