Salmo salar (Atlantic salmon): 106606370
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Entry
106606370 CDS
T04363
Name
(RefSeq) collagen alpha-1(XIII) chain-like
KO
K16617
collagen type XIII alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106606370
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106606370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106606370
NCBI-ProteinID:
XP_014057997
UniProt:
A0A1S3S156
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Position
ssa01:complement(55901023..56019876)
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AA seq
734 aa
AA seq
DB search
MEEDQKWGVVDKSVRRTCSDHPCKKGGHWTIWKDLSGITVCIALSLLSLGFCVLVYLRTS
ELKSRILNLEKQRDTQLSAWITLEQVEPVVFGRIDQILEEKLAARLPKTRETREAPPSCV
CPPGPPGPPGRSGFPGDKGTMGIPGRMGIKGYAGEKGAPGEPGLSIIGPRGPPGQPGTRG
FPGFPGPIGLDGKPGQNGLKGDLGQRGPKGVAGEPGLKGEKGVCGDYTHRQMLPIPMRNM
PPINPVILKRLKGEPGAQGPPGPPGPPGPSGTSGLNGASGPPGKPGEPGKPGKDLRLLSG
MKGEPGMAGIKGDVGPAGPEGPKGLKGELGLKGDFGMPGMPGKQGLKGEPGFPGAPGRKG
QAGIPGTPGFPGKRGYRGDKGEPSAAGTGIKGEPGTPGLPGLSGSKGDKGDQGLKGEAGS
DGPAGPRGPPGEAGEPGKSEIINNENDIRNVPLMGPPGPAGVPGTPGTKGEVGLPGPSGL
DGEKGPRGKPGEPGPVGPAGPEGPRGEGGLMGFSGPKGDKGDMGPFGSPGLDGPTGEKGV
SGPPGPIGLPGTMGQKGESGDKGGRSDMVYGPPGPPGPQGPVGPAGPEGLGGPKGEQGIG
IRGEKGASGSKGDKGDRGHLGLPGAHGLDGRPGRVGLIGPVGVAGPAGPKGDRGFKGDSG
VPGPIGPQGIPGLVGPQGFKGNRGERGKKGNRGTKGDKGDQGAPGLDAPCPLGDDGLPVS
GCWNKGQNPFQLAK
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagatcaaaagtggggagttgttgataaaagtgtgcggaggacttgcagtgac
cacccttgcaaaaagggtggtcactggacgatttggaaagatttgtccggtataactgtc
tgcatcgcattatctttattgtctcttggattttgcgttctcgtttacctgaggacctcg
gagctgaagtccaggatactaaacctggaaaaacagagagatacgcagctctccgcgtgg
atcacactcgagcaggtggaacccgttgtctttggacgaatagatcagattctggaagag
aaattggcggctcgacttcccaaaacacgagagaccagagaagcgccccctagctgtgtc
tgtccaccaggacctcctggtccgcccggacgatcaggctttccgggtgacaaaggaaca
atgggaattcctggaagaatggggataaaaggatacgcaggggagaagggagcgccaggg
gagccaggcctgtctatcattgggccacgaggacctcctggacagccaggaacaagaggc
ttcccaggcttcccgggtccgattgggttggacggcaagcccggacagaacggcttgaaa
ggagacttgggtcaacgtggtcctaaaggagttgcaggtgaacctggtctgaaaggggaa
aagggcgtatgtggagactacactcacaggcagatgttacccatccccatgcgaaacatg
cccccaataaaccctgtaatcctaaagcgcctcaagggtgagcctggagctcagggccca
ccaggacctcccgggcctccagggccctcagggacctctggactgaatggtgctagtgga
ccgccgggtaaacctggtgaaccaggaaaacctgggaaagatctaaggctcctatcaggg
atgaagggggagccaggcatggcaggaataaagggtgatgttggccccgctggtcctgaa
ggccccaagggactgaagggagagcttggactgaagggggactttggtatgccgggaatg
ccagggaaacaaggattgaagggagagccaggttttccaggcgctcctggaagaaagggt
caagctggtatccccggtacacctggttttcctggaaagaggggctacaggggtgacaaa
ggcgaacccagcgcagcaggaactggcatcaaaggagaaccagggacaccaggactccca
ggcctatcaggatccaagggtgacaaaggcgaccaaggtctcaagggggaagcaggatct
gatggcccagctggaccaagaggtcctccaggtgaagcaggggagccagggaaatcagaa
atcatcaacaatgaaaatgatattcggaatgtacctttgatgggcccacctggacctgca
ggggtccccggaacaccaggaacaaagggtgaagttggccttccaggcccttcaggtctt
gacggagagaagggtcctcgggggaagcctggagagccaggtcctgttggcccagcaggc
cctgaaggtcccagaggggaggggggcctgatgggtttctcaggacctaaaggagacaag
ggggacatgggtccctttggatcacctggtttagacggccctactggtgaaaagggggtt
tctgggccccctggccccattggattaccaggcacaatgggtcagaagggtgagtccgga
gataagggaggaaggtcagacatggtctatgggcccccagggcctccagggccccaagga
ccagttggccccgcgggacctgaaggactgggaggaccaaagggggagcaaggcataggc
atacggggagagaaaggagcatctggttcgaagggggataaaggggacaggggccatctt
ggacttcctggagctcatggtttagacggcaggcctggtcgagtgggtctaataggacca
gttggtgtggcagggccagcaggaccaaagggagatagaggtttcaagggagattcagga
gtcccaggaccaattgggcctcaaggcatccctggtttagtaggaccacaaggattcaaa
gggaaccggggagagaggggcaagaaaggcaacaggggaactaaaggggataagggagac
caaggagcacccggattagatgccccctgtccgttgggggatgacggcctaccagtatca
gggtgttggaataaaggtcaaaatcctttccaactggccaagtag
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