Salmo salar (Atlantic salmon): 106610980
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Entry
106610980 CDS
T04363
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD9
KO
K18408
ATP-dependent RNA helicase TDRD9 [EC:
5.6.2.5
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sasa03036
]
106610980
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
106610980
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106610980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Helicase_C
DEAD
HA2_C
ResIII
nSTAND3
AAA_14
AAA_22
AAA_19
PhoH
T2SSE
FtsK_SpoIIIE
HA2_N
NACHT
Motif
Other DBs
NCBI-GeneID:
106610980
NCBI-ProteinID:
XP_014066218
UniProt:
A0A1S3SPE3
LinkDB
All DBs
Position
ssa09:24654730..24685824
Genome browser
AA seq
1344 aa
AA seq
DB search
MKKAITAEQITEWFTLGTQFANIRITDEPPKKVKSEESSRQSPAKAPQQQVSPKSEGGGL
RNKTGKPDFSASAPPPPLASYDYPSLPITKNRQELISLIENNSVVIIRGATGSGKTTQLP
QFILDYYSEKNAPCNLVVTQPRKIGASSIARWVARERKCTLGSLVGYQVGLEKMATEHTR
LIYMTTGVLLQKLVGAKSLTEYSHIFIDEVHERTEELDFLLLVVRKLLQSNSRYIKVILM
SATINCREFAEYFGTPIRSQMNPAYVFEVEGAPYTIEEFYLDDLCSLIPYRVDTHHPDEP
YITVEMYNVAVSLIQSFDELEAKDQSRTEREGGLSLPDRGSVLVFLPGLGEIHYMQEALS
KLVRKRLQVYPLHSSVTLEEQNGVFLVPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLA
RHMVCDKETSYQSLRLTWASKTNCNQRRGRAGRVSKGYCYRLVTKEFWRNEIPDYVVPEL
VRAPLANIMLKVKLLDMGDPRSLLSTALSPPNLNDIERTVLQLKEMGALSLGNNGQGQKR
FDGELTFLGRMLAHLPVDLHLGKMIVLGHVFGCLEECLIIAASLSLKSFFAMPSLQQLAG
YRSKLSFAHGVPSDSIAFVNAFKAWHTSRNKGELRHPKDELEWGKENCIQIKRIREVAEL
YEDLKKRASQFNMHVIENPLPMDYSSLHKQRFILQVVIAGAYYPNYFAQGEMDEELASKE
LSGHDPKTTVLVRNLPPYSFLYYKQLQSLFRQCGQVKSIAFDGSRGHVEFYRTTTRGSGV
LPEVSLALLLAHQRHPLDLFVHPSDEVEARAGSMTVCHMRYARPVVCRVNVDFQDNSVYP
VGVLSSTVDPDKLPSNPIFVVNITEVVEVGHFWGFQAGEASMEKQRYLTAEINSRELCPV
LVSLYPNLLCLAPFSEGDEQGLYYRAKILHVRGSSVEVFFLDYGNTTLVSCSCLRELPAD
IMAHPLQAQEFRISGMHPSAQSMILGDQWSSPARNRFITLVNGRSLIVSLFSILHGVMHV
ELLINTDTVTSSVADIMIQEGHAIKAEESFESKQSHEVLVSLYKDLQDGTFTPNATSSSW
KTNKEKEKQLIDSLLQSFSKTSRSFLKSKVPVHGPSSPHKVNFHSFCNVSHYRSVRIEKD
SINSVALNDCPQDSHQRMLVAGVVSVNATGACILLKETTLMPHIHGLPALITMLFSPVIE
LRTNEERTSYTGALCGLGWNVQSQEAVLPEHDIELAFDVKFDVEDITEINALRGAINRLV
CEGPNGPLHLGPDRINSLQEDCRERLVRLFTKSPPREDLVPVYYEEPNKWNQVDPSQKME
IVQKEDGKNKGVLFQLHPVTLLNM
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagcaataactgcagaacagataacagaatggtttacattaggcacccaattt
gctaacattagaattacagatgaacctccaaaaaaagtaaagtcggaggagtcatcaaga
cagagccctgcaaaagctccccaacagcaggtcagcccaaagagtgaaggtgggggactg
aggaacaagacaggaaagcctgacttttctgcgagtgcgcctccacccccattagccagt
tatgactaccccagcttgcccatcacaaagaatagacaggagctcatctctctgatcgag
aacaactctgtggtgatcattcgtggagccacaggcagtgggaaaactacccagctgccc
cagttcatcctggactactacagcgagaagaatgccccctgtaaccttgtggtcacccag
cctcgcaaaataggcgccagcagcattgcccgatgggttgccagagagcgcaagtgcacc
ctgggtagtctggtgggataccaggtgggcctagagaagatggccactgaacacaccaga
ctcatctacatgaccactggggtgctgctgcagaaactggtcggcgccaagagcctgact
gagtactcccacatcttcatagatgaggtccatgaacggacggaggagttggactttctc
ctgttggttgtgaggaagctcctccagtccaactctcgttacatcaaggtcatcctcatg
tcagccaccatcaactgcagggagtttgcagagtactttggcacccctatccgcagccag
atgaacccagcctatgtgtttgaggtggagggggctccctacaccatcgaggagttctac
ctggatgacctctgcagcctgattccttacagggtggatacacaccatccagatgaacct
tacatcactgtggagatgtacaacgtggctgtcagccttatccagagctttgacgagctg
gaggccaaagatcagagcaggactgagcgggagggaggcctgtctctgccagaccggggc
agtgtgctggtgttccttcctggtctgggtgagatccactacatgcaagaggccttgtct
aagctggtgcgcaagagactgcaggtgtaccctctccactcctctgtcactctggaggag
cagaacggggtgtttctggtgcctgtcccagggtacaggaagatcatcctctccaccaac
attgcagagagctctgttacagtcccagatgtcaaatatgtgattgatttctgtctggcg
cgtcacatggtctgtgacaaagagaccagttaccagtccctccgcctcacctgggcctcc
aagaccaactgcaaccagcgcagaggcagggctgggcgagtgtctaagggctactgttac
cggctggtgaccaaggagttctggaggaatgagatcccagactatgtggttcctgagttg
gtgcgtgcccccctggccaacatcatgctgaaggtgaagctactggacatgggggacccc
cgctccctcctctccactgccctctcaccccccaacctcaatgacattgagaggactgtg
ctccagctcaaagagatgggcgcactgtccctggggaacaatgggcagggccagaagcgt
tttgatggagagctgacgttcctgggtcggatgctggctcacctgcctgtggacctgcac
ctggggaagatgatcgtactcggacacgtctttggctgtctggaggagtgcctcatcata
gccgcctccctgtctctgaagagcttctttgccatgccctccctacaacaactggcaggc
tacaggagcaagctgtcctttgcacacggtgtgccgagtgattccattgcttttgtcaac
gcattcaaagcttggcacacgtccagaaacaagggagagttgaggcacccaaaggatgag
ctagagtggggcaaggagaactgcatccagatcaagaggataagagaggtggccgagctc
tatgaggacctgaagaagagggcgtcccagttcaacatgcacgtgattgagaacccattg
cccatggactactccagtctccacaagcagagattcatcttgcaggtggttatcgctggt
gcctactaccccaactactttgcccaaggggaaatggatgaagaactggcctccaaagag
ctgtctggccatgatcccaaaacaacagtgctggtgaggaacctgcccccctatagtttc
ctgtactataagcagctgcagtccctgttccgccagtgtggccaggtcaagtccatagcc
tttgatggatccagagggcatgtggagttctaccggacgactacccgggggtcgggggtg
ctccctgaggtgtcactggccctcctcctggcccaccagaggcatcctctggacctgttt
gtgcaccccagtgacgaggtggaggcccgcgctgggagcatgaccgtctgccacatgaga
tacgctcgtcctgtggtttgcagggtgaatgtggacttccaggacaactcagtctaccca
gtgggggtgctgagtagtaccgtcgacccagacaagctgccttccaaccccatcttcgtg
gtcaacatcacagaagtggtggaggtgggccacttctggggcttccaggcaggcgaggcc
agcatggagaagcagcgctatctgacagctgagattaattctcgtgagctgtgtccagtt
cttgtctccctctaccccaacctactgtgcctggcacctttctctgagggcgacgagcag
ggcctctactaccgtgccaagatcctgcacgtccgcggcagctctgtggaggtgttcttt
ttggactacggaaacaccaccctggtgtcatgcagctgtctgagggagctacctgctgat
atcatggcccacccattgcaggcccaggagtttcgtatctcggggatgcatccatcagcc
cagtccatgatcctgggggaccagtggagcagccccgcacgcaaccgcttcataacactg
gtgaacggccgctcactcatcgtctccctgttctctatcctgcatggcgtcatgcacgtg
gagctgctcatcaacactgacacggtcacctccagtgtggctgatatcatgatacaggag
ggacacgccattaaggccgaagagagctttgagtccaagcagagccacgaggtgctggtt
tctctgtataaagacttgcaggacggaaccttcacccccaatgctaccagcagctcctgg
aagaccaacaaggagaaggagaagcagctcatcgacagcctgctccagtccttctccaag
accagccggtcctttttgaagagcaaggttcctgtgcatggcccatccagccctcacaaa
gtcaacttccacagcttttgcaatgtcagccactacaggtcggtgcgcatagaaaaggac
agcatcaactcagtggcgttgaatgactgtcctcaggacagccatcagaggatgctggtg
gccggcgtagtgtctgtcaatgccacaggcgcatgcattctactgaaggagactacgctg
atgcctcacatccacggcctgcctgccctcatcaccatgctcttcagccctgtcatagag
ctacgcaccaatgaggagagaaccagctacactggcgccctctgtggtctggggtggaac
gtccagtctcaggaggctgtcctacctgaacatgacatagagctcgcctttgatgtcaaa
ttcgatgtagaggacatcacagagatcaatgcgttgcgtggtgccatcaaccgtctggtg
tgtgaggggcccaacggtcctctgcacctggggcctgacaggatcaacagcctgcaggag
gactgccgcgaacgcctcgtcaggttatttaccaagtcacccccccgggaagaccttgtt
cctgtgtactatgaggaaccaaataaatggaaccaggtggatcccagtcagaagatggag
attgtccagaaggaagatggaaagaacaaaggtgtcctgttccagctacaccctgtcaca
ctgctcaacatgtga
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