Staphylococcus aureus subsp. aureus FDAARGOS_5: X998_0828
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Entry
X998_0828 CDS
T03492
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sauf
Staphylococcus aureus subsp. aureus FDAARGOS_5
Pathway
sauf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sauf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X998_0828 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sauf03019
]
X998_0828 (rnr)
03016 Transfer RNA biogenesis [BR:
sauf03016
]
X998_0828 (rnr)
Enzymes [BR:
sauf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
X998_0828 (rnr)
Messenger RNA biogenesis [BR:
sauf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
X998_0828 (rnr)
Transfer RNA biogenesis [BR:
sauf03016
]
Prokaryotic type
tRNA degradation factors
X998_0828 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Rho_RNA_bind
RNase_II_C_S1
TBPIP_N
Motif
Other DBs
NCBI-ProteinID:
AHW68294
LinkDB
All DBs
Position
complement(1509140..1511512)
Genome browser
AA seq
790 aa
AA seq
DB search
MNLKQSIEEIINQPEYEPMSVSDFQDALGLSSADSFRDLIKVLVELEQSGLIERTKTDRY
QKKHSYRGQSKLIKGTLSQNKKGFAFLRPEDEDMEDIFIPPTKINRALDGDTVIVEIHQS
KGEHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDDKRIMQDIFIPKGQSLGAVDG
HKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEAVP
DHIENTEIKGRHDLRDELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVTEG
SALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPNVDRLTLSCRMEIDASGRVVKHE
IFDSVIHSDYRMTYDAVNQIITEKDPNIREQYNEITPMLDLAQDLSNRLIQMRKRRGEID
FDISEAKVLVNEDGIPTDVQLRQRGEGERLIESFMLIANETVAEHFSKLDVPFIYRVHEQ
PKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQQAH
YDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLPELA
EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI
ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPLPKNDR
SQRPARGKTIQAKTRGKSLDKSKSDDKGRKKKGKQRKGKNQRNNDKSGNSKHKPFYKDKS
VKKKARRKKK
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaagcaatctatagaagagattattaatcaacctgaatatgaacctatgtca
gtgtcagattttcaagatgcattaggtttaagcagtgccgactcgtttagagatttaatt
aaggtgcttgtggagttagaacaatcaggattaatcgaacgtacaaaaacagacagatac
caaaaaaagcatagttatagaggtcaatcaaaattgataaaaggaacgttaagtcaaaat
aaaaaaggctttgcattcttaagacctgaagatgaggatatggaagatatatttattccc
ccgacgaaaattaatcgtgccttggatggagatactgttattgtagaaatccatcaatca
aaaggtgaacataaaggtaaaatcgaaggggaagttaagtcgattgagaagcattctgta
actcaagttgttggtacgtatagtgaagctagacattttggctttgttattccggatgat
aaacgtattatgcaagatattttcattcctaaaggtcaaagtttaggcgcagtcgatggt
cataaggtacttgtacaaattactaagtatgctgatggttcagataatccagaaggacat
atttctgctattttaggacataaaaatgatcctggcgtagatattttatctattatctat
caacatggcatagaaattgaatttcctgatgaagtgttacaagaagctgaagcagtacct
gatcatattgaaaatactgaaattaaaggccgtcatgatttacgtgatgaattgacaatc
acaattgatggtgctgatgctaaagacttagatgacgcaattagtgttaaaaagttagcg
aacggtaatacgcaattaactgtaagtattgctgatgtcagctattatgtaacagaaggt
tctgcattggataaagaggcatatgatagagcgacaagtgtatatcttgttgaccgtgta
attccaatgattccacatcgattaagtaatggtatttgttcattgaatcctaatgttgat
cgtttaactctaagctgtcgcatggaaatcgatgctagtggtcgcgttgttaaacatgaa
atttttgatagtgttatacattctgattatcgaatgacgtatgatgcggtaaatcagatt
attactgaaaaggatcctaacattcgcgaacaatataatgaaattacgcctatgctagat
ttagcacaagatttatctaatcgtttgattcaaatgagaaaacgacgtggtgaaatcgat
tttgatattagtgaagcaaaagtattagttaacgaagacggtataccaacagatgttcaa
ttaagacaacgtggcgagggtgaacgtctaattgaatcatttatgttaattgcaaatgaa
acagttgctgaacattttagtaagttagatgtaccttttatttaccgagtgcatgagcaa
cctaaatcagatcgcttaagacaattctttgattttattacaaactttggcatcatgatt
aagggtactggcgaagatattcatccaacaacacttcaaaaggttcaagaagaagtagaa
ggtcgacctgaacaaatggtcatttcaacaatgatgttgcgttcaatgcaacaagcgcat
tatgatgatgtgaacttgggacattttggcttatcagctgaatattatacgcattttaca
tcaccaattagacgttatcctgatttaacagttcatcgtttaatccgtaagtatttaatt
gagaaatcaatggataacaaagaagtgaagcgttgggaagacaaattgcctgagttagct
gaacatacttctaaacgtgaacgtcgtgctattgaggcagaacgtgatactgatgaattg
aaaaaagcagaatatatgattcaacatattggtgatgaatttgaaggtattgtcagctca
gtagctaacttcggtatgttcattgaattgccaaatacgatagaaggtatggttcatatt
gcgaatatgactgatgattattaccgttttgaagagcgtcaaatggcattaattggtgag
cgtcaagctaaagtatttagaattggtgacacagttaaggttaaagtgacgcatgttgat
gtagatgaacgattaattgattttcaaattgtaggtatgcctttaccgaaaaatgatcga
tcacagcgcccagcgcgaggtaagacaattcaagccaaaacgcgtggtaaatcattagat
aaatcaaaatctgatgataagggtcgtaagaaaaaaggtaagcaacgtaaaggtaaaaac
caacgtaataatgataaatcaggtaatagtaagcataagccattttataaagataaaagt
gtgaaaaagaaagcacgtcgtaagaaaaaataa
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