Streptococcus australis: NCTC3168_00087
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Entry
NCTC3168_00087 CDS
T07826
Symbol
cshA_1
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
saup
Streptococcus australis
Pathway
saup03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saup00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC3168_00087 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saup03019
]
NCTC3168_00087 (cshA_1)
03009 Ribosome biogenesis [BR:
saup03009
]
NCTC3168_00087 (cshA_1)
Enzymes [BR:
saup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC3168_00087 (cshA_1)
Messenger RNA biogenesis [BR:
saup03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC3168_00087 (cshA_1)
Ribosome biogenesis [BR:
saup03009
]
Prokaryotic type
rRNA helicases
NCTC3168_00087 (cshA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
DUF2405
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VEE18241
LinkDB
All DBs
Position
1:complement(91661..93235)
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AA seq
524 aa
AA seq
DB search
MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEDIISRVPENRQTLLF
SATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPE
LSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQIIENLTKK
RMKGLKPASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFGKDARQLASEFSPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGGGFGGKGKGGRGGRRGDDRRDRDRRGNGRRD
DYRKGGRSKDRFDKEKRYRKDNKKPRNTSSEKKTGFVIRNKGDK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaatgaatttaatctttctgctgatttgttagcagaaattgaaaaagcagga
tttgtagaagcaagtcctatccaagagcaaaccattcctttggctcttgagggaaaagat
gttatcggtcaagcacagactggtacagggaaaactgcagcctttggcttgccaactctt
gaaaaaattcgtacagaagaagcaactatccaagctttagtaattgccccaactcgtgaa
ctagctgttcaaagtcaggaagaactcttccgctttggccgtagtaaaggtgtgaaagtc
cgttcagtatacggtggttcaagtattgaaaaacaaatcaaggctcttaaatcaggtgcc
cacatcgttgtaggaacaccgggacgtttacttgacttgattaaacgcaaggctctgaaa
ttacatgatattgaaaccttgattttagatgaagcagatgaaatgctgaacatgggattc
cttgaagatattgaagatatcatctctcgtgtaccggaaaatcgtcaaaccttgctcttt
tcagcgactatgccagatgctatcaaacgtattggtgttcagttcatgaaagaacctgag
catgtgaagattgctgctaaagaattaacaacagaactggtagaccagtactatatccgc
gttaaggaacaagaaaaattcgacaccatgactcgtcttatggatgttgatcaacctgag
ttgtcaatcgtttttggtcgtaccaaacgtcgtgtagatgagttgactcgtgggctgaaa
atccgtggtttccgtgcagaagggattcatggagatttggaccaaaacaaacgtcttcgt
gtccttcgtgattttaaaaatggcaaccttgatgtcctcgttgcaacagacgtagctgcc
cgtggtttggatatttcaggtgtgactcatgtctacaactacgatatcccacaagaccct
gagagttatgttcaccgtattggtcgtacaggacgtgcaggtaagtcaggtcagtctatt
accttcgtttcacctaatgaaatgggttatctccaaatcattgagaacttaactaagaaa
cgtatgaaaggtctcaagccggcaagtgcagaagaagccttccaagctaagaagcaggtt
gcactgaagaaaattgaacgtgattttgcgaatgaggagatccgtagcaactttgaaaag
tttggcaaggatgctcgtcaattagcatcagaattcagcccagaagaattggccatgtat
atcctcagcttaactgttcaagacccagatagtcttcctgaggttgagattgcacgtgaa
aaaccgttaccatttaaaccatctggtggtggcttcggtggcaaaggcaagggtggtcga
ggaggccgtcgtggggatgaccgtcgagaccgtgatcgccgtggcaatggtcgtcgtgat
gactatcgtaaaggtggacgttcaaaggatcgttttgataaagagaagcgttaccgtaag
gataataaaaaaccacgcaatacttcaagcgagaagaaaacaggctttgtgattcggaac
aaaggagataaataa
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