Shewanella avicenniae: JYB87_09425
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Entry
JYB87_09425 CDS
T07845
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
savi
Shewanella avicenniae
Pathway
savi00550
Peptidoglycan biosynthesis
savi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
JYB87_09425 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
savi01002
]
JYB87_09425 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
savi01011
]
JYB87_09425 (dacB)
Enzymes [BR:
savi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
JYB87_09425 (dacB)
Peptidases and inhibitors [BR:
savi01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
JYB87_09425 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
savi01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
JYB87_09425 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
QSX32013
LinkDB
All DBs
Position
2132147..2133658
Genome browser
AA seq
503 aa
AA seq
DB search
MINLRRVLAAVLVIGVNPHVNADNANLLQDWQQLRPEHGQVSLILADPQGKRLIDSDSHK
LLLPASTQKLLTAVAAATLLGDEFQFYTRLLYRGELKSGGLNGDLIIQFDGDPQLSAEQL
GQLLQHLTDAGIKQINGDIIIANNDLAPQWAAGWLWDDLGVCFAAPVGKLVLDQNCVKGS
LTANADNSSRLYLRYPLTVSNSAQYQPETPAALCKLHLQYHRSNQYQLSGCYQQKNPLPL
EVAIVDPAAYIQAQIKQRFPRHVDLRGSIKIAATDIKDTKALLSFPSMPLRLLIIKMLTK
SDNLIADALMKKLGEVKFGQYGFEFGAEAIKQTLEGLGIDLETANIVDGSGLSRYNQLTA
AQLFQILLLIQQEPKLNWLISALPVAGESGTLKHKRGYLNPQLRGGVMAKTGSMTGVDNL
AGFLRIDEQQPQLYPFVIMENGLSAAAYRPAKFSPPFLIFARNALQQAQKHQVAKQPATS
KSQSSPTAEATNRSLNTPKAADN
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgattaacctcaggcgcgtcttagcagcagtactcgttatcggcgtcaacccacatgtt
aacgccgataacgccaatctattgcaagattggcaacagttacgccccgagcacggccag
gtatcgcttatattggccgatccccaaggcaaacgcttaatcgatagcgatagccataaa
ttattgttgcctgccagtacccaaaaattattgaccgccgttgccgccgccaccttattg
ggagacgaatttcagttttacactcgcttgctataccgtggtgaactcaaatcaggtggg
ctcaatggagacctgattattcaatttgatggcgatcctcagctgagcgctgagcaactc
ggacaactgctacaacacctcaccgacgccggaattaagcagattaacggcgacatcatt
attgccaacaacgatcttgcgccccaatgggccgcaggttggctgtgggatgatttaggc
gtgtgctttgccgcccccgtcggaaaattagttttagatcaaaactgtgtcaaaggctcg
ctcacggccaatgccgataacagcagtcggctgtatctgcgttatccacttaccgtgagt
aacagtgcacagtatcaacctgagacgcctgcagcattgtgtaaactgcatctgcaatat
catcggtcaaatcaatatcaattgagtggctgttatcaacagaaaaacccgttaccgctg
gaagtcgctattgttgatccggccgcttatatccaagcgcaaatcaaacaaaggttccca
cgccatgtagaccttcgaggcagtatcaaaattgctgcaaccgatatcaaagacaccaaa
gcgttgctgagttttccatcaatgccgctacgactattgatcatcaagatgctaaccaaa
tcagacaatttaattgccgatgcacttatgaaaaaactgggtgaagtaaagtttggccag
tatggatttgagtttggcgccgaggcaatcaaacaaaccctagagggcctcgggatagat
cttgaaacggccaatatcgtcgatggctcaggcttatcgcgctataaccagttaaccgcg
gcgcaactgtttcagatattgttgcttatccaacaggagcccaagttaaattggctcatt
agcgccctgcccgttgcaggagagagtggcacgctaaagcacaaacgcggctatcttaat
ccgcaactgcgcggtggcgtaatggccaaaaccggcagtatgaccggcgttgataacttg
gctgggttcctacggattgacgaacagcagccacaactttatccgtttgtgatcatggaa
aatggactgtccgctgcggcttatcggccagcaaaattttcaccaccatttcttatcttt
gcccgaaatgccttacaacaagcgcaaaagcaccaagtggcaaaacagccagccacaagc
aagtctcaatcgtcgccaacagctgaagccaccaaccgcagtttaaacacacccaaagcc
gctgataactaa
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