KEGG   Shewanella amazonensis: Sama_0888
Entry
Sama_0888         CDS       T00445                                 
Name
(GenBank) signal recognition particle subunit FFH/SRP54 (srp54)
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
saz  Shewanella amazonensis
Pathway
saz02024  Quorum sensing
saz03060  Protein export
saz03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:saz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    Sama_0888
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Sama_0888
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Sama_0888
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:saz02044]
    Sama_0888
Enzymes [BR:saz01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     Sama_0888
Secretion system [BR:saz02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   Sama_0888
  Eukaryotic Sec-SRP protein
   Sama_0888
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N CbiA Zeta_toxin AAA_22 cobW AAA_24 AAA_33 AAA_31 KTI12 YqeC ABC_tran Helicase_RecD APS_kinase FliD_C Mg_chelatase AAA_30 AAA_14 T2SSE TsaE ATP_bind_1 AAA_16 KAP_NTPase Rad17 6PF2K ArsA_ATPase Thymidylate_kin AAA_28
Other DBs
NCBI-ProteinID: ABL99095
UniProt: A1S3Y9
LinkDB
Position
1076533..1077906
AA seq 457 aa
MFENLTDRLSRTLKTISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFVNAVKERAV
GQDVAKSLTPGQVFVKIVQSELEKAMGEANEALNLAAQPPAVIMMAGLQGAGKTTSVAKL
SKFLRTRQKKSVLVVSADVYRPAAIKQLETLAKEVEVEFFPSDVSQKPIDIANAAISHAK
LKFIDVVILDTAGRLHVDEAMMDEIKALHAAVKPIETLFVVDAMTGQDAANTAKAFNEAL
PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRILGMGDV
LSLIEQVERGVDKEKAMKLASKVKSGGNFDLEDFREQLQQMKNMGGMMGLLEKLPGVGQL
PPEAMAQIQDGKMTRQMEAIINSMTPGERQNPDIIKGSRKRRIAAGSGTQIQDVNRLLKQ
FTQMQKMMKKMSSKGGMQKMMRAMGGMMPGGMKLPGR
NT seq 1374 nt   +upstreamnt  +downstreamnt
atgtttgagaacctgaccgacagactgtcgcgtacgctgaagaccatcagcggtcgcggt
cgcttaacggaagacaacattaaagacaccctgcgggaagtccgtatggcgctccttgag
gccgatgtggccttgccggttgtccgtgaatttgtgaacgccgttaaagagcgcgcagtg
ggccaggacgtggccaagagcctgacgcccggtcaggtgtttgtcaaaatcgttcaaagc
gagcttgaaaaggcgatgggtgaggccaacgaggccctgaatcttgccgcccagcccccg
gctgtgatcatgatggcaggtctacagggtgcgggtaaaaccacctctgtggccaagttg
tccaaattcctgcgtacccgtcagaaaaaatctgtactggtggtcagtgccgacgtttac
cgccctgcggcaatcaagcagctcgaaaccctggccaaagaagtggaagtggaattcttc
ccctccgatgtgagccaaaagcccatcgacatcgccaatgcggctatttcgcacgccaag
ctgaaattcattgatgtagtgatcctcgataccgcgggccgattgcacgtcgatgaagcc
atgatggatgaaatcaaggcactgcatgcagcagtcaagcctatcgaaacgctgttcgtg
gtagacgccatgacgggtcaggatgcagccaacaccgccaaggcctttaacgaggcgctg
ccgttgactggtgtggtactgaccaaggtggacggtgatgcccgcggtggtgcggcgttg
tctatccgccacattactggcaagcccattaagttcctcggtgtcggcgaaaagacagat
gcgctggagccattccaccctgaccgtgtagcctcgcgcatccttggcatgggtgacgta
ctttccctgattgagcaggtagagcgcggcgttgataaagaaaaagccatgaagctggcc
tccaaggtcaaatcgggtggcaatttcgacctcgaagacttccgcgagcagctgcagcag
atgaaaaacatgggcggcatgatgggactgctggaaaaattgcccggcgttggtcagctg
ccaccggaagccatggcacaaattcaggatggtaaaatgacccgccaaatggaggctatt
attaactccatgacaccgggcgaacgtcagaatcctgatatcatcaagggctcccgcaag
cgtcgcattgcagcgggtagtggcacacaaattcaagacgttaaccgtctgcttaagcag
ttcacccagatgcagaaaatgatgaagaagatgtcttccaagggtggaatgcagaaaatg
atgcgcgccatgggtggtatgatgcccggcggcatgaagcttcccgggcgttaa

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