Shewanella amazonensis: Sama_1933
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Entry
Sama_1933 CDS
T00445
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
saz
Shewanella amazonensis
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
saz03016
]
Sama_1933
Enzymes [BR:
saz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Sama_1933
Transfer RNA biogenesis [BR:
saz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Sama_1933
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABM00139
UniProt:
A1S6Y2
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All DBs
Position
complement(2359614..2360729)
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AA seq
371 aa
AA seq
DB search
MLEFHYVKDDEALTALVDQYSQSRLLVLDTEFVRTRTYYAKLGLIQVYDGNTLALIDPLD
IQDLSGFWALLTNPNILKLVHSCSEDLEVFARYGKVQPTPLFDSQIAAALSGMGHGLGYA
KLVEECLGQTLDKGESRTDWIKRPLTDAQLQYAANDVFYLYQLYPQLEQKLKTLGRFDWV
LEEGARLTEGRLQRPEAATAYLKVKNAFQLTPKQLAYLKVLAAWRLERALDRDLALGFVI
KDHALIALAKKPPRSISDLLKINDLSEHEKRIHGKDILKVLQKADVENPPAAIDVIALKP
AYKQAFKNIKAALTEICEREGLPSELFCSKRHIHEYLEYRWQGDAEDTPLLLQGWRGKLA
TDVLQALVLEP
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
ttgctggagtttcactacgtaaaggacgatgaagcgctgaccgctttggtcgaccaatac
agccaaagccgattattggtattggacaccgagtttgtgcgtacccgtacctattacgcc
aagttgggtctaattcaggtatacgatggcaatactctggccctgatagacccgctcgat
attcaggatttatctggcttttgggcgctgcttaccaacccgaatatccttaagttggtt
cattcctgctctgaagatctggaagtctttgcccgttatggcaaggttcagcccaccccc
ctgtttgattcgcagattgcggccgcgctcagtgggatgggccatggacttggctatgcc
aaactggtcgaagaatgtttggggcagaccctggacaagggagaatcccgtacagactgg
ataaagcgccctctgaccgatgcccagctgcagtacgccgccaatgatgtgttctatctg
taccagctttatcctcagcttgaacaaaagcttaaaacgctgggccgcttcgattgggta
ctggaggaaggcgcccgcctgacagaagggcgtttgcagcgccctgaggctgcaacggca
tatcttaaggtgaagaacgcatttcagctgaccccgaagcaattggcctacctgaaagtg
ctggcagcctggcggttggagcgcgcacttgaccgggaccttgcgcttggctttgtgatt
aaagaccacgccctgattgcccttgcgaaaaagccgcctcgctccatcagtgatttattg
aaaatcaacgatctctctgagcatgagaaacgcattcacggcaaggacatcctgaaagtg
ttgcaaaaggccgatgtggagaatccaccggccgccattgatgtgattgcactcaagccc
gcttataagcaggcgtttaaaaacatcaaggccgcgctcaccgagatttgtgagcgtgaa
gggttaccgagcgagcttttctgctcaaaacgtcatatccacgaatatctcgagtatcgc
tggcaaggtgatgcagaggatacgccgctgttgctgcagggatggcgcgggaaactcgca
actgacgtactgcaagctttggtactggaaccctaa
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