Shewanella amazonensis: Sama_1988
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Entry
Sama_1988 CDS
T00445
Name
(GenBank) ribosomal large subunit pseudouridine synthase C
KO
K06179
23S rRNA pseudouridine955/2504/2580 synthase [EC:
5.4.99.24
]
Organism
saz
Shewanella amazonensis
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
saz03009
]
Sama_1988
Enzymes [BR:
saz01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.24 23S rRNA pseudouridine955/2504/2580 synthase
Sama_1988
Ribosome biogenesis [BR:
saz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Sama_1988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
DUF3603
Motif
Other DBs
NCBI-ProteinID:
ABM00194
UniProt:
A1S737
LinkDB
All DBs
Position
complement(2414958..2415950)
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AA seq
330 aa
AA seq
DB search
MRIVFTRCFAMNKETVPTQVQLISIDEDGAGQRIDNFLLAKLKGVPKSMIYRIVRKGEVR
VNKKRIKPEYKLAAGDEVRVPPVRVAEKDYRTAPSANLNRVAQLEDRILFEDKQIIVLNK
PAGIAVHGGSGVDYGVIESLRSLRPTCKFLELVHRLDRDTSGVLLIAKKRMALRHLHDQL
RNKQMQKVYQALVRGQWQEHDRVVKAPLLKITLKSGERIVRVNSEGKPSETRFRVLRRFD
EASLVEASPVTGRTHQIRVHCQYQGHPIACDDKYSEQKFDDAMRAKGLQRLFLHAAQLTF
THPESETQMTVQAPLDGDLTAVLDALEQKG
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgttttcaccagatgttttgccatgaataaagaaacagttccaacccaggtt
caattgatcagcattgatgaagatggtgccggtcagcgtattgataatttcctgctcgcc
aagctcaagggcgtacccaagagcatgatctatcgcatcgtccgtaagggcgaggtgagg
gttaacaagaagcggattaagccagaatacaagctcgcagcgggcgatgaggtgcgtgta
ccgccggtgcgcgtagccgaaaaagattatcgtacagcgccttctgccaacctcaatcga
gttgcccaacttgaagaccgtattctgttcgaagataagcagattattgtgctgaacaaa
ccggcaggtattgccgtacatggtggcagtggggtggactatggtgtgattgagtcgctt
agaagcctgcgacccacctgtaagtttctggaactggtacatcgtctcgatcgtgatacc
agcggtgtgctgctgatagccaaaaagcggatggccctgaggcacctgcacgatcagctc
cgaaataagcagatgcaaaaggtgtatcaggcgctggtgcgcggccagtggcaggagcat
gacagggtagttaaagcaccgctgcttaaaatcaccctcaaatccggcgagcgcatagtg
cgggtgaacagcgaaggcaaacccagcgaaacccgtttccgggtgctgcgtcgctttgac
gaagcaagcctggtggaagcaagcccggtgacaggtcgcacccatcaaattcgtgtgcat
tgccagtaccaggggcatcctattgcctgtgatgataaatacagtgagcaaaaatttgat
gacgccatgcgggccaagggactgcagcgtttgtttttgcatgcagcgcaactcaccttt
acccatccggagtctgaaacccagatgacggttcaggcaccactggacggcgatttaacg
gccgtgctggatgcgctggagcaaaaaggctga
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