Sphingobium baderi: ATN00_21490
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Entry
ATN00_21490 CDS
T04194
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
sbd
Sphingobium baderi
Pathway
sbd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATN00_21490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbd03400
]
ATN00_21490
DNA repair and recombination proteins [BR:
sbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATN00_21490
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ATN00_21490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
UvrB_inter
UvrB
ResIII
DEAD
AAA_22
UB2H
AAA_30
DUF87
PAC2
Kinesin
Motif
Other DBs
NCBI-ProteinID:
ALR23069
UniProt:
A0A0S3F677
LinkDB
All DBs
Position
pDE2:42192..44168
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AA seq
658 aa
AA seq
DB search
MSTDVFILHSQYTPAGDQPEAIARLIAGVEEGAHHQTLKGITGSGKTFTMANIIHRLKRP
TLILAPNKTLTSQLYDEMRRFFPENAVEYFVSYYDYFQPEVYLPGRDEFIPKDSSINEHL
ERLRLSTTKSLIERRDTIVVASVSSIYGMGDPDNYRALQVPLTEGARLGQEELFRSLARL
QYDRAEHKLKRGTYRADGDAVEIYPADSEYKALRVGLANGVIASLQWFDAATGKPMESAD
HYLVSPKTVLAATADQARKAATAILEELETQVERLTSENRLTEAARLYDRITNDAEMLRE
VGYCSGMENYACYLSGRDPALPPITLLDYLPKDGLLFVDESHVMIPQISAMFRGDQARKD
TLIDYGFRLPSSKDSHPLSFHEFEQVKPQTIFVSATPGAYEVKASQGRVVEQIVRPTGLL
DPKVEVRPSQGARDDLLREIAQRTQRDERVLVTTLTKVATEELHAFLESEGIRARYMHSD
IKVEDRVAIIEGLRVGEFDVLIGISLLREGLDIPEASLIAIFDADRAGFLRSAQALIQMI
GRVARNVNGTAVLYADMVTPAMRAAIDETESRRQRQIAFNEENDVTPLSSVRGLASAQPY
GQEPSVHSEAFCENLYELCDRITEKEQALLAAVDHGQEDRAETIRGELDGLYRQFIYL
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaccgatgttttcatactgcactcgcaatacacgccggcaggcgatcagcccgaa
gcgatcgcgcgcctgatcgccggcgtcgaagagggggcacatcaccagaccctcaagggc
atcacgggctcgggcaagaccttcacgatggcgaacatcatccatcgtctgaagcgcccc
accttgatccttgcccccaacaagacgctgacatcgcagctctatgacgagatgcggcga
tttttccctgaaaacgccgtggagtatttcgtctcctattacgactatttccaaccggaa
gtgtatctgccgggccgcgatgagttcattccgaaggattcctcgatcaacgagcatctg
gaacggttgcgcctgtcgacgacaaaatcgctgatcgagcgccgcgatacgatcgtcgtc
gcctcggtatcgtcgatctacggcatgggcgatcccgacaattatcgcgcgctccaggtt
ccgctgaccgagggcgcgcggttgggacaggaagagcttttccgcagcctggcgcgcctg
caatatgatcgggccgagcataagctgaagcgcggcacttatcgcgctgatggcgacgct
gttgagatttacccggcggattcggaatataaggcgctgcgcgtcggtttggcaaacggc
gtgatcgcgtcgctccaatggttcgatgcggcgaccggcaagccgatggaaagcgccgat
cactatcttgtctcgcccaagactgttctggcggcgaccgcagatcaggcccgcaaggcc
gccacggcgatcctcgaagagttggaaacgcaggtcgaacggctgaccagcgaaaaccgc
ctgacggaagcggcgcgcctctatgatcgcatcaccaacgatgccgagatgttgcgcgag
gtcggatattgctcgggcatggaaaattacgcctgctatctgagcggtcgtgaccctgcg
ctcccgcccataaccctgctcgactatctgcccaaggacgggctgctgttcgtcgacgaa
tcgcatgtgatgatcccacagatctcggcgatgttccggggcgaccaggcccgcaaggat
acgctgatcgattatggcttccgcctgccgtcttcgaaggacagccaccccctgagcttc
cacgagttcgaacaggtcaagccgcagacgatcttcgtgtccgccacccccggcgcttat
gaggtaaaggcctcgcaaggcagggtggttgaacagatcgtgcggccgaccggcctgctc
gatccgaaggtggaagtccgcccgtcccaaggcgcgcgtgacgatttgctacgcgagatc
gcgcagcgcacgcagcgcgatgagcgcgtgctggttacgacgctgaccaaggttgcgacc
gaggagctgcacgctttcctcgaaagcgaaggcattcgcgcgcgttacatgcactctgac
atcaaggtcgaggatagggtcgcgatcatcgagggcctgcgcgtgggcgagttcgacgtg
ctgatcgggatcagtttgctgcgcgaagggctcgacatcccagaagcgtcgctgattgcg
atcttcgatgcagaccgcgcgggcttcctgcgctcggcccaggcgctgatccagatgatc
ggccgcgtcgcgcgcaatgtgaacggcaccgctgtcctctacgccgatatggtgacgccg
gcgatgcgggccgcgatcgatgagaccgagagccggcgacagcgccagatcgccttcaac
gaggagaacgacgtcacaccgctctcgtcggttcgcggcctggcgtcggcgcagccctac
gggcaagagccgtcggtccattcggaagccttctgcgagaacctgtacgagctttgcgac
cggatcacggagaaggaacaggcgctgctcgcggcggtggatcacggccaagaggatcgg
gccgagacgatccggggcgagctggacggcctctaccgtcagttcatttatctgtga
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