Sorghum bicolor (sorghum): 8058721
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Entry
8058721 CDS
T01086
Name
(RefSeq) SWI/SNF complex subunit SWI3A
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
8058721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8058721
03036 Chromosome and associated proteins [BR:
sbi03036
]
8058721
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
8058721
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
8058721
PBAF complex
8058721
GBAF(ncBAF) complex
8058721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SURF2
SWIRM
Myb_DNA-binding
SWIRM-assoc_1
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
8058721
NCBI-ProteinID:
XP_021318974
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Position
6:48786815..48794763
Genome browser
AA seq
719 aa
AA seq
DB search
MSPPVAGAAATSGDGSPRELYTIPASSGWFRWDGIHETERQALPEFFGGAGGAGFGTATR
NPRIYREYRDFIIAKYREDPARRLTFTEVRRALVGDVTLLRKLFAFLDSSGLINFSASSS
SSGPASRKQEVGVVVEAPVGLQVTPRPPASYFAEEKRGAVGGEKENGFRLPPLTSYSDVF
GEWAPGKAPICGFCGEECNGAKVETLQDGFKVCSKCSKSNNDNNKEEANKCPGDKKESME
KSSGAWTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTINGK
SASRLHINQATDGKTNQHIMKEPSSHTTEMADGMQIDGNEDSADKSVEEYPTKRRRLFSS
MDATTSLMEQLALLTTTASPDVVAAAADAAIKAFSNENPQAKKAFRLSEREYKTKAFGSN
HVQQIDRKIGDKDVKMHGQPGSDKQEKKFIANAYQLRAAVATAVGVAAARAKMLADQEER
EMELLMASVIETQTGHELPEREKEAYARSRACRLALIDHAVARKKPPLNAFKPHPEHKSK
LVCKITGDTVNKLEDHIWKHINGKRFLNKLEKLEDQVASGEMADEEPVKSNEVAKKSKSR
KKDKKKANVASPSLPREPKPEMDDSDDPDFWVPPVGSRWDDDDGKDRWESSPGKPNSAKN
KGGSDDDGAGDNDGGGDDDTADKDDAESRELASRTKRMSIEAVGPSSFASRKKKPKKEQ
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccggtggccggcgcggccgccacctccggcgacgggtcgccgcgcgagctc
tacaccatcccggcatcatccggttggttccggtgggacgggatccacgagacggagcgg
caggcactgccggagttcttcggcggggccggcggtgctgggttcgggacggcgacgagg
aacccgcgaatctaccgcgagtaccgcgacttcatcatcgccaagtaccgggaggacccg
gcgcgccgcctcactttcaccgaggtccgcagggcgcttgtcggggacgtcacgctcctc
aggaagctcttcgccttcctcgactcctccggcctcatcaacttctcggcctcctcctcg
tcctcgggccccgcgtcacggaagcaggaggtgggggtcgttgtggaggcgcccgtgggt
ctgcaggtgacgccgcggccgccagcgtcctactttgccgaggagaagcgtggggccgtg
ggcggggagaaggagaacggattccggttgccgccactgacctcctacagtgatgtgttt
ggggaatgggcacctgggaaggcgcctatatgtggtttttgcggtgaggagtgcaatggt
gcgaaagttgagacgctgcaggatggttttaaagtttgttcaaaatgttccaaaagcaat
aatgataataataaggaagaagcgaataaatgtccgggtgacaagaaggagagtatggaa
aaatcttccggtgcatggacagacgcggaaacattactccttttagaaggagtcctaaaa
catggagatgactgggatcttatcgcccagcatgtccgtacaaagaataaatcagaatgc
atagcaaggcttattcagttaccttttggcgaacatatgctgggcacaataaatggtaaa
tccgctagcaggctccacataaaccaggcaactgatggaaaaacaaaccagcacattatg
aaggagccttcaagccacacaactgaaatggctgacggcatgcagattgatggaaatgaa
gatagtgctgataaatcagttgaagaatatcctacaaaacgcagacggttattttcttcc
atggatgctaccacttcattaatggagcagttagcgctcctgaccacaacagctagccca
gatgttgttgctgcagctgctgatgctgcaattaaagcgttcagcaatgaaaacccacaa
gcaaagaaagcctttcgcctcagcgagcgagaatataagactaaggccttcggttctaat
catgtccaacagatcgaccgcaaaatcggcgataaggatgtgaaaatgcatggccagcct
ggttctgataagcaggaaaagaagttcattgctaatgcatatcaattgagggcagctgtt
gctactgctgttggtgtagctgctgcccgtgctaaaatgcttgcagaccaggaggagcga
gaaatggagctcctaatggcatctgtgattgaaactcagacagggcacgagctgccggag
cgggagaaggaggcgtacgcgcggtcccgcgcctgccgcctcgcgctcattgaccacgcc
gtcgcgcgcaagaagccgccgctcaacgccttcaagccccaccccgagcacaaatcgaag
ctggtatgcaagattacaggggatacggttaacaagttggaggatcacatatggaagcac
atcaacgggaagagatttcttaacaagctagaaaaactagaagaccaggtggcttctggc
gagatggctgatgaagaacctgtgaagtcaaatgaagtggcaaagaagagcaagtcaaga
aagaaggacaagaagaaagctaatgttgccagtccttctttgccaagagaacctaaacca
gagatggatgattcagatgatccagatttctgggtgcctccggttggaagtcgctgggat
gacgatgatgggaaagacagatgggagtcatcaccaggaaagcccaactcagcaaagaac
aaaggtggttctgatgatgatggtgctggtgataatgacggtggtggtgatgatgatacg
gctgacaaggatgatgctgaatcaagggaacttgcttcgaggacaaagcgaatgtcaata
gaggctgttgggccaagtagcttcgcttcaaggaagaaaaaacccaagaaggagcagtaa
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