Shewanella baltica OS185: Shew185_1460
Help
Entry
Shew185_1460 CDS
T00571
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03030
DNA replication
sbm03430
Mismatch repair
sbm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shew185_1460
03430 Mismatch repair
Shew185_1460
03440 Homologous recombination
Shew185_1460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbm03032
]
Shew185_1460
03400 DNA repair and recombination proteins [BR:
sbm03400
]
Shew185_1460
Enzymes [BR:
sbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Shew185_1460
DNA replication proteins [BR:
sbm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Shew185_1460
DNA repair and recombination proteins [BR:
sbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Shew185_1460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ABS07610
LinkDB
All DBs
Position
1760235..1763708
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGA
GIKPIIGADFWMQVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQVAGRVVIDQEW
LLTYNEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFLELIRTGRPDEER
YLHMAVILAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDMSIEDFLVDCSRKGL
EERLGFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRKPIRIEAISLTDPACFRLL
QKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
QFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDNLGPHRASMMAT
LPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEIMLFTEAFEKFNHLLEKDRILICEGEVSYDDFAGGNRMTARNIIDISEARSHFAK
ALEIDMDGSELTPSALDTFEQALSPWRNGAVPVVINYTQALAKGQFRLADAWRVNPTDDL
MLSLESLLGPNKVRILF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatcttcgtgtccacagtgacttctctatgaccgatggc
gtggccaaggttaagccgattttggcgcaggtggaagcgcagggaatggcggctgtcgcc
ctgactgaccaaaacaacttttgtggtttggttaagttttacagtggttgccatggtgcg
gggatcaagccgattatcggcgccgatttttggatgcaagtgcctggattcgaaggcgaa
ttatgcgccttgaccataattgcgatgaacaatgtcggttatcagaatctgacccaaatc
atcagtcaggcctatttgcgtggccaagtggctgggcgcgtggtgatcgaccaagagtgg
ttactcacttataacgaaggcattttgctgttatcaggcgccaaagagggcgatctgggt
aaggcgctcctcaagggtaatagcactcaggttgaatctttatgtgagttttatcaaact
catttcgccgatcgttattttctcgaactcattcgtaccggccgccccgacgaagagcgc
tatctgcacatggctgtgatcttagcgcaggataagggtatccctgtggtcgccactaat
caggtggtgttccttaaacctgaggatttcgacgcccatgaaattcgagtcgccatccac
gatggttttacccttgccgatccgcgccgtcctaaaaagtacagtgaacagcagtactta
cgtagcgaagaggaaatgtgcgagctatttgccgacattcctgcggcgctggcgaacagt
gtcgaaatcgctaaacgttgtaacgtgacgattcgtttgtacgagtatttcctgcccaac
ttcccgacgggcgatatgtccatcgaagactttctggtcgattgctcgaggaagggcctt
gaagagcggctcgggtttttgttccccaatcccgaagtgcgcgccgagaaacggggcgaa
tacgatgagcggctcgatatcgaactcaaagtaatcaaccagatggggttccccggttac
ttcttgatcgtgatggagttcatccaatggggtaaagataacggtatcccagtgggaccc
ggtcgtggttcgggtgcgggttcacttgtggcctatgcgctcaaaatcaccgacttagat
ccgctcgaatttgacttactgttcgaacgcttcttgaaccctgagcgtgtttccatgccc
gactttgacgtcgacttctgcatggatagacgcgatgaagtgatcgaccacgtggccgag
ttgtacggccgcgaagcggtatcgcaaatcattaccttcggtactatggcggcaaaagcg
gttattcgtgacgttggccgagtgctcggtcatccctatggtttcgttgaccgaatttca
aaattaattccacctgagcctggaatgacactggcgaaagcctttgaagtcgagccagcg
ttgcaagaatcctatgatggcgatgaagacgtaaaagatctgatcgacatgtgccgtaag
cttgaaggtgtaacccgtaacgccggtaagcacgccggtggtgtagtgattgcaccgaca
aaaattaccgattttgcgccgctctattgcgatgcagaaggcaaaaacccagtaacacaa
tttgataaaaacgacgttgaaaccgcagggctggttaagttcgatttcttgggattaaga
accctgacgattatcgactgggcgctcgagatggtgaacaaggtcgaagtgaaaaacggg
cgcaaaccaatacggattgaggcgatttcactcacagatcccgcctgtttccgtttgctg
caaaagtatgaaaccacggcggtattccagctcgaatcccgtggtatgaaggatttgatt
aagcgtctgcagcccgactgtttcgaagacatgattgcactggtggcactattccgtccg
gggccgttgcaatcgggcatggtagataactttatcgaacgtaagcatgggcgcgaggaa
gtctcgtacccagattctcagtatcagcatgaatcgcttcgagaactgttatcgccgacc
tacggcattattctgtatcaagagcaggtgatgcagattgcgcaggtgctgtcgggctac
acccttggcggcgccgacatgctgcgccgtgctatgggtaagaaaaagcccgaagagatg
gctaagcagcgcagtatctttaaagaaggcgcaatcaataacggcgtcgatggcgacttg
tcgatgaagatcttcgatttagtggaaaagttcgccggctacggttttaacaaatcccac
tccgccgcttatgcgctggtttcctatcagaccttatggcttaaaacccatttccctgcg
cagtttatggcggcggtaatgtcggccgatatggataacacagataaaattgtgaccttg
gtcgatgaatgtgaacgcatgggcttgccgcttattccgccggatgtgaacaaaggtttg
ttcaaatttaccgtcgatgatgatctgcgcattgtttatggcattggcgccattaaaggt
gtgggtgaaggcccagttgaatcgattttagaggcgcgtaaagacggcccctttgtcgat
ttattcgatttctgtgcccgcattgatttgaaaaaactcaataagcgcgtgattgaaaag
ctgatctgcgcgggcgccttagacaatcttgggccgcaccgtgcgtcaatgatggccacc
ttgcccgaagccattcgcgccgccgatcaacatgctaaagccgaagcgattggccaacac
gatatgtttggtttgctcaacagtgaacccgaagacagtaagcagcagtttgttgaatgt
accccttggccagataaaatttggcttgaaggcgagcgtgaaaccttaggcttgtatttg
accggtcatccgatcaatcagtatttaaaagagcttaagcattacacgtccgggcgtttg
aaagatgtgcatcctaccgagcgcggtaaaacagccaaggctgcagggttagtggtggca
acacgcgtgatgttgaccaagcgcggatcgaaaatgggtctgttgacgcttgatgataag
agcgcgcggcttgagatcatgttgtttaccgaagcctttgaaaagtttaatcatctgctg
gaaaaagatcgtatcctcatttgtgaaggtgaggtgagttacgatgatttcgccggcggc
aaccgcatgacggcgcgtaacattatcgacatcagtgaggcgcgaagtcactttgctaag
gcgttagaaatcgatatggatggcagtgagttaacgccatcggcccttgataccttcgag
caagccctaagcccgtggcgtaacggcgccgtgcctgtggtgatcaactacactcaagcc
ctagccaaaggtcaatttagactcgccgatgcttggcgagtgaatccgaccgatgacttg
atgctctcgctcgaatcgctactcgggccaaacaaggtgagaattttattctaa
DBGET
integrated database retrieval system
