Shigella boydii Sb227 (serotype 4): SBO_3824
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Entry
SBO_3824 CDS
T00301
Symbol
uvrD
Name
(GenBank) DNA-dependent ATPase I and helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sbo
Shigella boydii Sb227 (serotype 4)
Pathway
sbo03420
Nucleotide excision repair
sbo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SBO_3824 (uvrD)
03430 Mismatch repair
SBO_3824 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbo03400
]
SBO_3824 (uvrD)
Enzymes [BR:
sbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SBO_3824 (uvrD)
DNA repair and recombination proteins [BR:
sbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SBO_3824 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SBO_3824 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABB68283
ShiBASE_China:
SBO3824
UniProt:
Q31UH5
LinkDB
All DBs
Position
3845941..3848103
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AA seq
720 aa
AA seq
DB search
MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCLPYSIMAV
TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENN
NGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL
EAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMG
TPMVENDSGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttacctgctcgacagccttaatgacaaacagcgcgaagcggtggccgcg
ccacgcagcaaccttctggtgctggcgggcgcgggcagtggtaagacgcgcgtactggtg
catcgtatcgcctggctgatgagcgtggaaaactgcttgccatactcgattatggcggtg
acgtttaccaacaaagcggcggcggagatgcgtcatcgtatcgggcagctaatgggcacc
agccagggcggcatgtgggtcggcaccttccacgggctggcgcaccgtctgctgcgtgcg
caccatatggacgccaatctgccgcaggattttcagatcctcgacagcgaggaccagcta
cgcctgctcaaacgcctaatcaaggcgatgaacctcgacgagaagcagtggccgccgcgc
caggcaatgtggtacatcaacagccagaaagatgaaggcctgcgtccacatcatattcaa
agctacggtaatccggtggagcagacctggcagaaggtgtatcaggcgtatcaggaagcg
tgtgaccgcgcgggcctggtggacttcgccgagctgctgctgcgcgctcacgagttgtgg
cttaacaagccgcatatcctgcaacactaccgcgaacgttttaccaatatcctggtggac
gaattccaggataccaacaacattcagtacgcgtggatccgcctgctggcgggcgacacc
ggcaaagtgatgatcgtcggtgatgacgaccagtcaatctacggctggcgcggggcgcag
gtggagaatattcagcgtttccttaatgatttccccggtgccgaaactattcgtctggag
caaaactaccgctctaccagcaatattctgagcgccgctaacgccctgattgaaaacaat
aacgggcgtctgggtaaaaaactgtggaccgatggcgcggacggtgagcctatttccctc
tattgcgcttttaacgaactcgatgaagcgcgttttgtggttaaccgcatcaaaacctgg
caggacaacggcggggcgcttgccgagtgcgccattctctaccgcagtaacgcccagtcg
cgtgtgctggaagaagcactgttgcaggcgagtatgccgtaccgtatttacggcgggatg
cgcttcttcgaacgccaggaaatcaaagatgcgctctcgtatctgcgcctgattgccaac
cgtaacgacgacgcggcctttgagcgtgtggtgaatacgccaacgcggggtattggtgac
cggacgctggacgtggtacgtcagacatcgcgcgatcgccagttaacactctggcaggca
tgtcgtgaactgttgcaggaaaaagccctcgccggacgtgctgccagcgccttacagcgg
tttatggaactgatcgacgccttagcgcaggaaactgccgatatgccgctgcatgtacag
actgaccgggtaattaaagactccggcctgcgtaccatgtacgagcaggagaagggcgaa
aaaggtcagacgcgtatcgaaaacttagaggaactggtgacggcaacgcgccagttcagc
tacaacgaagaagacgaagatttaatgccgctgcaggcgttcctatcccatgcggcgctg
gaagcaggcgaagggcaggcggatacctggcaggatgcggtacaactgatgaccatgcac
tcggcgaaaggtctggagttcccgcaggtgtttatcgtcggtatggaagagggcatgttc
ccaagccagatgtcgctggatgaaggcgggcgtctggaagaagaacgccgtctggcctac
gttggcgtaacccgcgcgatgcagaaactgacgctgacctacgcggaaactcgccgtctg
tatggcaaagaggtttaccatcgcccgtcgcgctttattggcgagctgccggaagagtgt
gtggaagaggtgcgcctgcgcgccacggtaagccgcccggtcagccatcagcggatgggt
acgccgatggtcgagaacgacagcggctacaagctcggccagcgtgtacgccacgctaag
tttggtgaaggcaccatcgtcaatatggaaggcagcggtgaacatagccgtttgcaggtg
gcattccagggccagggtattaaatggctggtggcggcttatgcccggttggagacggtg
tga
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