Shewanella baltica OS117: Sbal117_1823
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Entry
Sbal117_1823 CDS
T02013
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sbs
Shewanella baltica OS117
Pathway
sbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal117_1823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbs03019
]
Sbal117_1823
03009 Ribosome biogenesis [BR:
sbs03009
]
Sbal117_1823
Enzymes [BR:
sbs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Sbal117_1823
Messenger RNA biogenesis [BR:
sbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sbal117_1823
Ribosome biogenesis [BR:
sbs03009
]
Prokaryotic type
rRNA processing factors
Sbal117_1823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AEH13570
UniProt:
A0A7U4E0Y6
LinkDB
All DBs
Position
complement(2091715..2095149)
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AA seq
1144 aa
AA seq
DB search
MQRSAMFDDLYLKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIY
KGKITRVEPSLEAAFVDYGADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIV
QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPA
GMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQVKGAPFLIHQESNVIVRAIRDYL
RRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVPLFTHFQIESQIESAFQREV
RLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLV
VIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHI
CPRCHGQGTIRSTESLALSILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITE
QRHDVEVYVIPDAHMMTPDYRVIRHRSDDEISESSYKRIEQPDAKLYEPRKLERTAAPIP
ALKGFAAPQKVEQAPSPTVKVEAPQPGFFSKLVSAVSAMFAPSEKAEPVKVVETKTADTS
AANANRRNRRNDTRRPRNAQDADKAKEGTREPRSRNPKKPADAAVSTSTQERPVREKEEA
VKRQPKPRVQAPKDVVADVEADAPKQEVARERRQRRNMRRKVRIDNGHNTPDNAIPIAPE
DAAEVLAEIAAINAAAASTISVDTKAEVAQAPAETKAPRTRRQPRKEAAPAQEAAENIAV
EEKAMSSAAAETPAVDAVKTEEQAEVAAPADAVSQDNEAVDAESETADDQAKREQRDGQR
RSRRSPRHLRAAGQRRRRDEDDQGTSTPAQFVPNDELGADQEYPSEVASVRVEAPVVATK
TDAVTETQVTAKSVEVDTAQASEAPVVEAPAVVKAETKVETPANDVIAVETKPVEAKPVE
TKATEAEVPKAVEVKVEATPVVEAPVANVAAEVEAVKAPVVESPAVTPAAPKVETAKVEA
PKTETAVEPSVAPNVEVKEAVKATASAPMAKPAAIAKPQATVQAAPTTVNPQITDSVTDA
VVVNKPKAASRFGSMVSSDMTKPVVEVREQVAVPKGREYENTATEEPTAKIKLANGAESD
MARP
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcgcgatgtttgatgacctctatttaaagaagaatgacgtcatcatgaaa
cgtatgttaatcaatgcaactcaatcagaagagttgcgtgttgcccttgttgatgggcaa
caactgtatgatctagatattgaaagtccaggtcatgagcaaaaaaaatcaaacatttac
aaaggtaaaattacccgcgtagaaccgtctttagaagccgcttttgtcgactacggtgcc
gatcgtcacggctttttgccactgaaagaaatcgccagagaatatttcccgaaaggatat
tcgttccaaggtcgcccaaatatcaaagaagtggtcagtgaaggacaggaagttattgtc
caaattgacaaagaagaacgcggcaataaaggcgcagccttaacgaccttcatcagcctt
gcaggctcttacttagtattaatgccaaacaacccgcgtgcaggcgggatttctcgtcgt
atcgaaggtgatgagcgtactgagttaaaagaagcgatggccgatttggaagtgccagcg
ggcatgggtcttatcgtacgtactgccggtgtgggcaaagagtctgccgagttaaagtgg
gacttaaaagttctgcagcaccactgggcagcaatcaccgaagcttcacaggttaaaggc
gctcctttcttaattcaccaagaaagtaacgtgatcgtgcgcgctattcgtgactactta
cgtcgtgatgtgggcgagatcctcatcgaccatccacgtattttcgaagaagctaagcaa
catatcgccttagttcgccctgatttcgttgagcgcgtaaaactttacgaagccgaagtg
ccgttattcactcacttccaaatcgaatcacaaatcgaatcagcctttcaacgtgaagtg
cgtctgccatctggcggttcgattgttatcgacccaactgaagctttaacctcaatcgat
atcaactctgcccgtgccactaaaggcggtgatattgaagagacagcactgaacactaac
cttgaagccgccgatgaaattgcccgtcaattacgtctgcgtgacttaggtggcttagtg
gttatcgactttatcgatatgacgcctgtgcgccatcagcgtgaagttgaaaaccgctta
cgtgatgctgtgcaccatgaccgcgctcgcgtgcagttaggtcgcatctcgcgttttggt
ttgatggaaatgtcgcgtcagcgtctgcgtccttctttagaagaatctgctgcgcacatc
tgccctcgctgtcatggccaaggcacgattcgcagtactgaatctttagcactgtcgatt
ttacgtttgatggaagaagaagccatcaaagagaacacctcacaaatcgaagcgattgtg
cctgttgatgtggcggctttcttgttgaacgagaaacgcaaagccattcgcattacagaa
caacgtcacgatgtcgaagtgtatgtgatacctgatgcgcacatgatgacgccagattac
cgcgtgatccgtcaccgtagtgatgatgaaatcagtgagtctagctataagcgtatcgag
cagcctgatgccaaattgtatgagccacgtaaactggaacgtaccgcagcgcctattcct
gcattaaaaggttttgccgcgccacagaaagtggaacaagcgccatcaccaacggtgaaa
gttgaagcgccacaacctggcttcttcagcaagctagtgagtgcggtcagcgccatgttt
gcgccaagcgaaaaagcagaacccgtaaaagttgttgaaactaaaacagccgataccagt
gccgctaacgccaaccgccgtaaccgtcgcaacgatactcgccgcccacgtaatgcccaa
gatgctgataaagcaaaagaaggcactcgtgagccacgcagccgtaatccgaaaaaacca
gctgatgcagcggtaagcacaagcactcaagaacgcccagttcgcgagaaggaagaagct
gttaagcgtcaacctaagccacgtgtacaagcgccaaaagacgtggttgccgacgttgaa
gccgatgcacctaagcaagaagtcgcccgtgaacgccgtcaacgtcgtaacatgcgccgt
aaggtgcgtatcgataatggccataacacgccagataatgcgatcccaattgcaccagaa
gatgctgctgaagtattagctgaaattgcagccattaacgccgcagctgcaagcactatc
agtgttgacactaaagctgaagttgcccaagcacctgctgaaactaaagcgccaagaaca
cgtcgtcagcctcgtaaagaagcggcacctgctcaagaagcggctgaaaatattgcggta
gaagagaaagcgatgagttctgcggcagctgaaaccccagcagttgatgcagttaagact
gaagaacaggctgaagttgcagcaccagcggatgcggtatcgcaagataacgaagcggtc
gatgctgaaagcgaaactgctgacgatcaagcaaaacgcgagcaaagagatggtcaacgt
cgtagccgtcgtagcccacgtcaccttcgtgcagccggtcaacgtcgtcgtcgtgacgaa
gatgatcaaggtacatcaacgccagcgcaattcgtgccaaatgacgaattaggtgctgac
caagagtatccaagcgaagtcgccagtgtgcgtgtagaagcgccagtcgtcgcaactaaa
acagatgccgtgactgaaactcaagtaacagctaaatccgttgaagtagatacggcacaa
gcaagcgaagcacctgttgttgaagctcctgcagtcgttaaagctgaaacgaaagttgaa
acgccagcaaatgacgttatagcagtcgaaactaagccagttgaagctaagccagttgag
actaaagccactgaagcggaagtgccaaaagcggttgaagtgaaagttgaagctacacca
gtcgttgaagctccagtcgctaacgttgcagctgaagtcgaagcggttaaagcccctgta
gttgaaagcccagcggttacaccagctgcgccaaaagttgaaacggctaaagttgaagcg
ccaaagactgaaactgctgtagagccaagcgttgcaccgaatgttgaagttaaagaagcg
gttaaagcaacagcctctgccccaatggcaaaacctgctgctatcgctaagcctcaagca
acagtgcaagcagcccctactacagttaatccgcaaatcaccgattcggttactgatgcg
gttgttgtcaacaagccgaaagctgccagccgttttggctctatggtatcttcggatatg
accaaaccagttgttgaagtgagagagcaagtggctgtgcctaaaggacgcgagtatgaa
aatactgcgaccgaagagcctaccgccaaaatcaaactcgctaacggtgcagagtcggat
atggctcgtccataa
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