Shewanella baltica OS117: Sbal117_2540
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Entry
Sbal117_2540 CDS
T02013
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sbs
Shewanella baltica OS117
Pathway
sbs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sbal117_2540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbs03400
]
Sbal117_2540
Enzymes [BR:
sbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sbal117_2540
DNA repair and recombination proteins [BR:
sbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sbal117_2540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
SBP_bac_3
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEH14248
UniProt:
A0A7U3ZBS2
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All DBs
Position
2893260..2896748
Genome browser
AA seq
1162 aa
AA seq
DB search
MTHISALTPPAVKNGNQIQTLSTVGGVCQAVTLASLARQHKGTTLVVTSDTPSALSLELE
LSYLLSKTGIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQLSQIEQNIVIVPVTTLMM
RLPPKAYLSANVFMLKKGDSYKLHDVRQHLTDTGYHSVEQVYEHGEFAIRGSILDIFPTG
MNMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAKEFPTDSSAIEGFRQRYRRRF
EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPKDTQLVTLGDIEKSARAH
LQEVEHRYQDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQMHVPTDGTETTKAVVIA
ASTLPDISANHKLKQPLLALQDYASSAKRMLFSAESEGRREALLELLAKIQLKPAQFNHF
DEFIQSDAKLGLIVSPLSRGCLLQISAKDGISIICETELFGHRISQQRRREKQRQISNDA
LIKNLAELKVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGDKLYVPVSSLHLI
SRYSVGADEDAHLNKLGNETWAKAKKKAIEKIRDVAAELLDVYARRQSRPGESCEIDEEE
YAQFARGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAG
KQVVVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIG
THKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSG
MRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVESIEKCAQGI
IDLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERAD
TFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQD
LEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKALKQGKEPSLAQMLNQQCEIELRIP
ALLPEAYVSDVNIRLSLYKRIAGCETEAALDELKVELIDRFGLLPEPTRNLMEMTLYKHE
ATRLGATKIEVHSKGGSIEFSHDHVIDPMFIIGLLQSQPQIYRMEGPNKLKFSLAAETSK
DRLALVKLLLEQLSQHRLGDNK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgactcacatatcagccctaacgccgccagccgtcaaaaatggcaatcaaattcagact
ctgtccactgtgggcggcgtttgccaagcagttacactcgccagtttagcgcgtcaacat
aaggggacgaccttagttgtcaccagtgatacgccaagcgccttaagcttagagctagag
ctgagttatttactcagtaaaacaggcattaaggtcagattattccctgaccgcgaaacc
ttgccctacgacagtttttcgccccatcaggatttgatctcccaacgactcgaaaccctg
tcgcagctgtctcaaattgagcaaaacatcgttatcgtgcccgtcacgaccttaatgatg
cgcctgccacctaaggcctatttaagcgctaacgtgtttatgctgaaaaaaggtgatagc
tacaaattacacgatgtacgccagcatttaaccgacactggctaccattcagttgaacaa
gtgtatgaacacggcgagtttgccattcgcggctcgattctggatatcttcccaactggg
atgaatatgccactgcgcatcgagctattcgatgaagaagtggaaaccatccgccatttt
gatcctgaaacccaacgctcattgcaacctgtcgactcgattcgcctattgcccgcgaag
gaatttccgaccgacagctcagccatcgaaggctttagacaaagataccgtcgccgtttt
gaagtcatagtcaaagagccagaatcagtttatcagctggtgagccgcaacttgatgccg
gcggggatagaaaactatctgccgctgttttttgatgacacagccaccctattcgattac
ttgcccaaggacactcagttagtcactttaggcgatatcgaaaagtcggcgcgcgcacat
ctgcaagaagtcgaacatcgctatcaagacaggcgcgtcgatccactgcggccgctactg
gcgcctaaagagctgtatttactcattgaagagttatttgccgcctttaaaccgctacca
cgttaccaaatgcacgtgccgacagatggcactgaaacgacaaaagctgtggttattgcc
gccagcaccctgcccgatatcagcgccaaccataaattaaagcaaccgctgttagcgcta
caagattatgccagcagcgccaaacgcatgttgtttagtgccgagtccgagggtcgccgc
gaagcgctgcttgaattactcgctaaaattcagttaaaacctgcgcagtttaaccatttt
gatgaatttattcaaagtgatgccaagttaggccttatcgtgtcgccgctgtcacgcggt
tgtttgctgcagatcagcgccaaagatggcatcagtatcatttgtgaaactgagctcttc
ggccatcgaatttcccagcaacgtcgccgtgaaaaacagcgccagatcagtaacgacgcc
ctgattaaaaacttggccgagctcaaagtcggccagcccattgtgcatttagaacacggt
gttgccctctacaaaggcttagtcacgctagatacaggcggactggtcgctgaatacctg
caattggaatacgctggcggtgacaaactgtatgtgccagtgtcttcattgcaccttatc
agccgctacagtgttggcgccgacgaagacgcccacttaaataaactcggcaatgagacc
tgggctaaagccaagaaaaaagccattgaaaaaatccgcgacgtcgcggccgagctgctc
gatgtctacgctcgtcgccaatctcgtcccggcgaaagctgcgagattgacgaagaagaa
tatgcccaattcgctcgcggtttccccttcgaggaaaccgtcgatcaagaaagcgccatc
atcgccgtattagccgatatgcaatcgccaaccgccatggacagattagtctgtggcgat
gtgggctttggtaaaaccgaagtcgccatgcgcgccgcctttgtggccgtcaacgccggt
aaacaagtggtcgtgctggtcccgaccacattgcttgcccagcaacactatgaaaacttt
aaagacagatttgccgactggcccgtggtcaccgaagtgatgtcacgctttcgcaccgcc
aaagagcagactcaagtgctacagcaattggaagaaggcaaagtcgatatcgttatcggt
acccacaagttattgcaatctgaggccaagtttgaaaacttaggcctactgatcatcgac
gaagaacacagatttggtgtgcgtcagaaagagaaaatcaaggcactgcgtgccaacgtc
gatatcttaactctgaccgcaacgcctattccacggaccttaaatatggccatgtcgggc
atgcgcgatttatcgattatcgccaccccgcccgccaaacgtttagcggtaaaaaccttt
gtgcgcgagtccgatcctgcaaccgtgcgcgaggccattttgcgggaaattctccgtggc
ggccaagtgtattacctgcacaataatgttgaaagtattgaaaaatgtgcccaaggcatt
atcgatttactgccagaagcacgggtagtcgtcgcccacggtcaaatgcgtgaacgcgac
cttgagcgggtgatgtctgacttttatcaccaaagattcaacgtgttagtctgtaccact
attatcgaaaccggtatcgacgtcccgagtgccaacaccattattattgagcgcgccgat
acctttggtctggcgcagttacaccaattacgcggccgcgtcggacgctcgcaccatcag
gcttatgcctatttgatgacgccgcatcccaaacgtatgaccccagatgcgcgtaaacgt
ttagaagccattgatgcccttgaagatctcggtgcaggctttatgctcgcgacccaagat
ttggagatccgcggtgcaggtgaactcttaggtgatgagcagagcggccatatttcgaaa
attggttttagcttatacatggaaatgctcgaagcggcagtcaaagccttaaaacaaggc
aaagagccatcgctggcgcaaatgctcaatcagcaatgcgagattgaactgcgtatcccc
gccctgctgcctgaggcctatgtgagcgacgtgaatattcgtctatcgctctataaacgt
atcgcaggttgcgaaaccgaagcggcgcttgatgagttaaaagtcgaattgatcgaccgt
tttggcctattacccgaaccgacgcgcaacttaatggaaatgaccctctataaacatgag
gcgactcgcttaggggcgactaaaatagaagtgcacagtaaaggtggcagcatcgaattt
agtcatgatcacgtcatcgatcctatgtttattattggattactccaaagccagccacaa
atctatcgaatggaaggaccgaataagttaaagttcagccttgcggccgaaaccagcaaa
gacaggctcgctttagtgaaactcttgctcgaacaattatcgcaacatcgtcttggagat
aataaatag
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