Salmonella bongori serovar 48 z41 --: N643_12730
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Entry
N643_12730 CDS
T03249
Symbol
recB
Name
(GenBank) exonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sbv
Salmonella bongori serovar 48:z41:--
Pathway
sbv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
N643_12730 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbv03400
]
N643_12730 (recB)
Enzymes [BR:
sbv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
N643_12730 (recB)
DNA repair and recombination proteins [BR:
sbv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
N643_12730 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AID27424
LinkDB
All DBs
Position
complement(2720631..2724176)
Genome browser
AA seq
1181 aa
AA seq
DB search
MNDVAEALDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGAAAFPRPLTVEELL
VVTFTEAATEELRGRIRSNIHELRIACLRESTDNPLYASLLAEINDKKQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPRDIA
QVVFDAWKGPNALLKEIDRYLQGEAPVIKAPPSQEETLASRHEQILARINQVKQQWREAV
SELEALLESSGIDRRKFNRGNQAKWIEKITTWSQEETKNYQLPEALGKFSQRFLAERTKA
GGVTPRHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDA
ALRSESGEALAAAIRARFPVAMIDEFQDTDPQQYRIFRRIWRHQPDTALLLIGDPKQAIY
AFRGADIFTYMKARSEVSAHYTLDTNWRSAPGMVNSVNKLFSQMDDAFMFRDIPFNPVKF
APGNQSLQFKVDGALQPAMTLWLMEGESCGSGDYQSYMAQVCATQIRDWLRAGQTGDALL
MKGDSSQPVRASDISVLVRSRREAALIRDALTLLAIPSVYLSNRDSVFETLEAQEMLWVL
QAVMAPERENTLRSALATSMMGLTALDIETLNNDENAWDAVVEEFDGYRQIWHKRGVMPM
LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGSQLESEHALVRWLAQHILEPDS
NASSQQLRLESDKHLVQIVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDRHSYEAVLDL
SHAEESIELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGR
LLQKGEPLDAAGLRTCIEALCDKDIVCRTPGNTDNERWQTAAASLTELSARTLQRLPYDS
WRVTSYSGLQQRGHSVAQDLIPRLDIDAAGVGEVTEAPAMTPHHFPRGASPGTFLHSLFE
ELDFTQPIDPQWVQEKLELNGFETQWEPVLTQWLDTVLHVPLNETGVRLSLLTAREKQVE
MEFYLPIVQPLTARELDALIRRYDALSAGCPPLDFTQVRGMLKGFIDLVFRYEGRYYLLD
YKSNWLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHRYLRHRMANYDYERHFGGVIY
LFLRGVDSERPQQGIFTTRPAVALINQLDEMFAGEMSEEAQ
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgtcgccgaggcccttgatcctctacgcttaccccttacgggcgagcgtctg
attgaagcgtcagcaggcacaggcaaaacgtttactatcgctgcgctatatttgcgtcta
ctgcttggtcttggcggagcggctgcatttccccgtccgctaaccgttgaagagctgttg
gtggtcacttttacggaggctgctaccgaagagctacgtgggcgaatccgcagcaatatc
catgagctgcgtatcgcttgcctgcgggagagtacggataatccgctgtacgccagtttg
ctggcggaaattaacgacaaaaagcaggccgcacaatggttattactggctgaacgacaa
atggacgaggcggcggtctttaccatccacggcttttgccaacgtatgctcagcctgaac
gcctttgaatccggcatgttgtttgagcaacagcttattgaagacgaatctctgttgcgc
tatcaggcctgcgctgatttctggcgtcgtcattgttatccgttgccacgtgacattgcg
caggtggtttttgacgcgtggaaagggccgaacgcgctattaaaagagattgatcgctat
ctgcagggcgaagcaccggttattaaagcgccgccatcgcaggaggagacgctggcatcg
cgtcatgagcagatcctggcgcgcatcaaccaggtaaagcaacagtggcgtgaggcagtt
agtgaactggaagcactgctcgaatcatccgggatcgatcgcagaaaattcaaccgtggt
aatcaggctaaatggatcgaaaaaattaccacgtggtcgcaagaagagacaaaaaactat
caattacctgaagcgttgggaaaattttcacagcgttttttagctgagcgtaccaaagcg
ggtggcgtgacgccccggcaccccttgtttgtcgcgattgataacctgctgggcgaaccg
ctatcgatcaaagatctggtccttaccagagcgctctcggaaatccgggaaacggtggct
caggaaaaacggcggcgcggcgagttgggatttgacgatatgctcagccgtttagatgcg
gcgctgcgtagtgaaagcggcgaagcgctggcagcggcgattcgtgcccgtttcccggtg
gcgatgatcgacgaatttcaggataccgatccacaacaatatcgtatttttcgccgcatc
tggcgccatcagcccgatacggcgctattacttatcggcgatcctaaacaagcgatttac
gcgtttcgcggcgcggatatctttacctacatgaaggcccgtagcgaagtgagcgcgcac
tatacgctcgacacgaactggcgctccgcgccggggatggtgaatagcgttaacaagctg
ttcagtcaaatggacgacgcctttatgtttcgcgacattcccttcaatccggtaaagttt
gcgccaggaaaccagtcgctgcaatttaaggtggatggcgctcttcagcctgcaatgacc
ctgtggctgatggagggggaaagctgtggttcgggcgactaccaaagctatatggcgcag
gtatgcgccacgcagattcgcgactggctgcgcgccggacaaacgggcgacgcgctgctg
atgaagggcgattcatcgcagcctgttcgcgcctcggatatcagcgtactggtgcgcagc
agacgggaagccgctctgatacgggatgcgctgacgttactggctatcccctccgtctat
ctttctaaccgcgacagtgtgttcgaaacgcttgaagctcaggaaatgctatgggtatta
caggcagtgatggcgcctgaacgcgagaatacgctgcgtagcgctctggcgacatcgatg
atggggctaaccgctctggatattgaaacgcttaataatgatgaaaatgcatgggatgcc
gtcgtcgaagagtttgatggctaccggcagatctggcataaacgcggtgtgatgcctatg
ctgcgcgcgctaatgtcggcgcgcaatattgctgaaaatctgctggcgacggcgggaggc
gagcgtcggttgacggatattctgcatatcagtgaactgttgcaggaagccggttcgcaa
ctggaaagcgaacatgcactggtgcgctggctggcgcaacatattcttgaacccgatagc
aatgcttcaagccagcagctgcgcctggaaagcgacaagcatctggtgcaaatcgttacc
attcataaatcgaaaggtctggaatatccgctggtctggctaccttttatcacgcatttt
cgtgtgcaggatcaggccttttatcacgacaggcactcttacgaagccgtactggatctc
agtcacgctgaagaaagtatagaattggcagaagccgaacgcctggcagaagatctgcgc
ttactgtatgtcgccctgacccgtgcagtgtggcactgtagcctcggcgtcgcaccgttg
gtacggcgtcgtagtgataaaaaaggcgagacagatgtccaccaaagcgcgttaggtcga
cttctgcaaaaaggtgaaccactggatgccgcaggcctccgcacttgtattgaggcacta
tgtgataaagatattgtgtgtcgaacgccaggcaatacagacaatgagcgctggcaaact
gccgcggcatcactcacggaacttagtgccagaacgctacaacgtctgccgtatgatagc
tggcgcgtcaccagttattctggtttgcaacaacggggacatagcgtggcacaagacctt
attcctcgcctcgatattgacgccgcaggcgtcggcgaggtgacggaagctccagccatg
acgccgcatcactttcctcgcggggcttcgccgggaacatttttgcacagtctgtttgaa
gagcttgattttacgcagcccatagaccctcaatgggtgcaggaaaaacttgaactgaac
ggctttgagacgcaatgggaacccgtgcttacgcaatggctggacaccgtgttacacgtg
ccccttaacgagacgggcgtcagactgagtctgcttaccgcgcgcgaaaaacaggtagaa
atggagttttatctgccgatcgtccagccgctgaccgccagagagttggatgcgttgatt
cgtcggtacgacgcgctttcagctggctgtcctccgctggatttcacccaggttcgcggc
atgttaaaaggctttatcgacctggtgtttcgttatgaaggacgttattacctgctcgac
tataaatctaactggctgggtgaggatagcgccgcttatacccaaacggcgatggccgca
gcaatgcaggcgcatcgctatgatttgcagtatcagctctatacgctggccctgcaccgt
tatctgcgtcatcgtatggcaaattacgactatgaacgccattttggcggtgttatctat
cttttcttgcgcggggtggatagcgagcgtccgcagcagggcatttttaccactcgccca
gcggtagcgttgattaatcaactggatgagatgtttgcaggtgaaatgagtgaggaggcg
caatga
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integrated database retrieval system
