Sphingomonas cannabina: LZK98_04290
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Entry
LZK98_04290 CDS
T08607
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
scab
Sphingomonas cannabina
Pathway
scab00260
Glycine, serine and threonine metabolism
scab00460
Cyanoamino acid metabolism
scab00630
Glyoxylate and dicarboxylate metabolism
scab00670
One carbon pool by folate
scab00680
Methane metabolism
scab01100
Metabolic pathways
scab01110
Biosynthesis of secondary metabolites
scab01120
Microbial metabolism in diverse environments
scab01200
Carbon metabolism
scab01230
Biosynthesis of amino acids
scab01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
LZK98_04290
09102 Energy metabolism
00680 Methane metabolism
LZK98_04290
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
LZK98_04290
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
LZK98_04290
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
LZK98_04290
Enzymes [BR:
scab01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
LZK98_04290
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Motif
Pfam:
SHMT
DegT_DnrJ_EryC1
Aminotran_1_2
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
UIJ46178
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Position
872305..873615
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AA seq
436 aa
AA seq
DB search
MSSHALFSDVQPDGFFTRNLADADPAVFAGVAHELDREQHQIELIASENIVSRAVLEAQG
SVFTNKYAEGYPGKRYYQGCHPSDEVEQLAIDRVKALFGCDFANVQPHSGAQANGAVMLA
LTKPGDTIMGLSLDSGGHLTHGARAAMSGKWFNAVQYGVTPDTHLIDFDQVERLAKEHRP
TLIIAGGSAYPRHIDFARFRAIADEVGAYFMVDMAHFAGLVAGGVHPSPFGHAHVVTTTT
HKTLRGPRGGAVFTNDEAIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALRPEFKTYAA
AVVENAKVLAATLAERGANLVSGGTDTHLALVDLTPLGVTGKDADEALERAAITCNKNGI
PNDPLPPVKTSGIRVGSPAGTTRGFGPAEFREIGNMVADVLDGLRKNGEAGDAQVEANVR
ERVRALCERFPIYPDA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccacgcccttttcagcgacgtccagccggacggtttcttcacccgcaatctt
gccgacgccgatccggcggtgttcgccggcgtcgcgcatgagctcgaccgcgagcagcat
cagatcgagctgatcgccagcgagaacatcgtctccagggcggtgctcgaagcgcaggga
tcggtgttcaccaacaaatatgccgagggctatcccggcaagcgctattaccagggctgc
catccctcggacgaggtcgagcagctggcgatcgatcgcgtcaaggcgctgttcggctgc
gacttcgccaacgtccagccgcattcgggcgcgcaggccaacggcgcggtgatgctggcg
ctgaccaagcccggcgacacgatcatgggcctcagcctcgattcgggcgggcacctgact
cacggcgcgcgcgcggcgatgagcggcaagtggttcaacgccgtccagtacggcgtgacg
ccggacacgcacctcatcgacttcgaccaggtcgagcggctggcgaaggagcacaggccg
acgctgatcatcgccggcggctcggcctatccgcgccacatcgacttcgcccgcttccgc
gcgatcgcggacgaggtcggcgcctatttcatggtcgacatggcgcatttcgcgggcctt
gtcgccggcggcgtccatccctcgccgttcggccatgcccatgtcgtcaccaccaccacg
cacaagacgctgcgcgggccccggggtggcgcggtgttcaccaatgacgaggcgatcgcc
aagaagatcaactcggcggtgttcccgggcctccagggcgggccgctgatgcacgtcatc
gccgccaaggcggtcgcgttcggcgaggcgctgcggcccgagttcaagacctatgccgcg
gcggtggtcgagaatgccaaggtgctggccgcgacgctggccgagcgcggcgccaacctc
gtctcgggcggcaccgacacgcatctcgcgctggtcgacctgaccccgctcggcgtcacc
ggcaaggatgccgacgaggcgctggagcgcgccgcgatcacctgcaacaagaacggcatc
cccaacgatccgctgccgccggtcaagaccagcggcatccgcgtcggatcgcccgccggc
accacgcgcggcttcggcccggccgagttccgagagatcggcaacatggtggcggacgtg
ctcgacggcctccgcaagaacggcgaggctggcgacgcgcaggtcgaggccaatgtccgc
gaacgggtgcgcgcgctgtgcgagcgcttccccatctatcctgatgcgtga
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