Streptococcus canis: NCTC12191_01285
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Entry
NCTC12191_01285 CDS
T07143
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scai
Streptococcus canis
Pathway
scai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12191_01285 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scai03019
]
NCTC12191_01285 (cshA)
03009 Ribosome biogenesis [BR:
scai03009
]
NCTC12191_01285 (cshA)
Enzymes [BR:
scai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12191_01285 (cshA)
Messenger RNA biogenesis [BR:
scai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12191_01285 (cshA)
Ribosome biogenesis [BR:
scai03009
]
Prokaryotic type
rRNA helicases
NCTC12191_01285 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
DUF1924
Motif
Other DBs
NCBI-ProteinID:
VEE25086
LinkDB
All DBs
Position
1:1270096..1271715
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AA seq
539 aa
AA seq
DB search
MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIRTKDNIIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALVLEHVETLILDEADEMLNMGFLEDIEAIISRVPADRQTLLF
SATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFNTMTRLMDVNQPE
LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA
RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMIENLTKK
QMKPLRPATAEEAFQAKKKVALKKIERDFADDAIRSNFDKFKGDAIQLAAEFTPEELALY
ILSLTVQDPDSLPEVEIAREKPLPFKYVGGGHGNKNGKGGRGRDNRNRGDHRGGYRGDRN
RDERNGDRRRQKRDKRDGHDGSGNRDFKRKPKRNAKDFFNKEKKSSPKNTGFVIRHKGE
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaatttaacttatcagaagacatccaatcagctgtggtcacagccggt
tttgagaaagcatctcctattcaggaaatgacgattcctctcgcattagaaggaaaggat
gttattggtcaggcacaaacaggaaccggtaaaacagcagcttttggtcttccaaccttg
aataagattcgtaccaaagacaatattattcaggctttggtcattgcaccaacgcgtgaa
ttggctgtgcaaagtcaagaagaattgttccgttttgggcgtgataaaggggttaaggtt
cgctctgtttatggcggatcaagcattgaaaaacaaatcaaggccctcaaatcaggtgcc
catattgttgtgggaacaccaggtcgtttattagacttgattaagcgtaaggcccttgtt
ttagagcatgttgaaaccttaatcttagacgaagcagatgagatgcttaacatgggattc
ttggaagacattgaagctattattagtcgtgttccagcagaccgtcaaaccttgctcttc
tccgcaacaatgccagcaccaattaaacaaattggggttaaattcatgaaagaccctgaa
catgttcaaattaagaacaaagaactaacaaatgtcaatgttgatcaatactatgtacgt
gttaaggaacaagaaaaatttaataccatgacccgtttgatggacgttaaccagccagaa
ttatctattgtttttggtcgtaccaaacgccgtgtcgatgaaattacacgtggtctaaaa
ttacgtggtttccgtgctgaaggaatccatggtgatcttgaccaaaataaacgcttacgc
gttatccgtgatttcaaaaacgaccaaattgatattcttgtagccactgatgtagcagcg
cgtggtcttgatatttcaggggttacccacgtttataactacgatattacccaagatcca
gaaagttatgttcaccgtattggtcgtactggtcgtgcgggtaaatcaggagagtccatt
acttttgtctcaccaaatgagatgggctacctttcaatgattgagaacctaacgaaaaaa
cagatgaaacctcttcgcccagcaactgcggaagaggcattccaagccaagaaaaaagta
gcccttaaaaaaattgaacgtgattttgcagatgatgctattcgttctaactttgacaaa
ttcaaaggagatgctatccaattagcagctgaattcactccagaagagttggcattgtat
attttgagcttaacggttcaagatccagatagcttaccagaagtggaaattgcgcgtgaa
aaaccattaccattcaagtatgtgggtggtggccatggcaataaaaatggcaaaggtggt
cgtggacgtgacaaccgtaaccgcggagatcaccgtggtggctatcgtggcgaccgtaac
agagatgagcgtaatggtgatcgtcgtcgtcaaaaacgtgataaacgtgacggtcatgat
ggcagtggcaatcgtgatttcaaacgtaaaccaaaacgtaatgctaaagattttttcaat
aaagaaaagaaatcaagccctaaaaacactggatttgtgattcgtcacaaaggtgaatag
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