Saccharomyces cerevisiae (budding yeast): YDL077C
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Entry
YDL077C CDS
T00005
Symbol
VAM6, CVT4, VPL18, VPL22, VPS39
Name
(RefSeq) Vam6p
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce04138
Autophagy - yeast
sce04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09140 Cellular Processes
09141 Transport and catabolism
04138 Autophagy - yeast
YDL077C (VAM6)
04148 Efferocytosis
YDL077C (VAM6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sce04131
]
YDL077C (VAM6)
Membrane trafficking [BR:
sce04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
YDL077C (VAM6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
Vps39_2
RPN7
Motif
Other DBs
NCBI-GeneID:
851482
NCBI-ProteinID:
NP_010206
SGD:
S000002235
UniProt:
Q07468
Structure
PDB
LinkDB
All DBs
Position
IV:complement(316971..320120)
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AA seq
1049 aa
AA seq
DB search
MLRAQKLHSLKSSDITAILPTEQSQKLVLAKKNGDVEVYSRDGNTLKLFQVYPDLLQNAK
NDPLPPVIENFYFANELSTIFAQCKETLILLSTTNLHEYDRIIDRRGINHCWLFERSHKN
KEEKNTYLIYSTINTAKMRVLIWEGRTYKNMMEASLSYRKETIRSIYPGETGITLATDLG
IYHWPYNKPSLIRIEKTVKNKFPKDMISALTELKEQAEKVIEKKPKKNSHFDAQSFSSMD
RMSRKSSMSSLWYRTIRNERGNKIRYTFELDGNDATPMIIDGATKKIFKVELMHNNEEPF
LIATDHATFSESNSEFDHMQYLSSNLLMLYNSSTIKFVDYENGFTFLQQKIPEGIKWVKN
LSGTYFLVWTSNDEVQLFSYHVDDGSEDDDQESICGDINDPDFYQLWRKVLFYKFFIDSP
HSKELCVSDNPEESLDICAMKLRDLTVMWCLRIFDKFQNYMVQLERSRNSRMIRSKCEEM
IIKSIFDLFIKFWAPPQLVILKVFPSAISSLVLEITGQEHHCLLKEAEEVKETYDIPPHL
LNRWCLPYLTDTRRHLQNLLSKENDDESRITWCYRDREIKQSFDFFLISNHDDVDLNTML
TLIDTVLFKCYLYYNPPMVGPFIRVENHCDSHVIVTELKIRHMFKDLIDFYYKRGNHEEA
LKFLTDLVDELENDNTDQKQRQKIDHGVKILVIYYLKKLSNPQLDVIFTYTDWLLNRHND
SIKEILSSIFFYDSQACSSRDHLKVYGYIKKFDKLLAIQYLEFAISTFRLEGNKLHTVLI
KLYLENLDIPSTRIKLKSLLETTSVYEPRTILKLLNDAIESGSDQLPTNQLNFVKYLKIF
PLSKLENHKEAVHILLDEIDDYKAATSYCNDVYQSDSTKGEELLLYLYSKLVSIYDSNRN
SKLILNFLQDHGSKLNSAEIYKNLPQDISLYDIGRVVSQLLKKHTSKMDETRLEKALLQV
ELVATTYKLNERMSSYGVLSDSHKCPICKKVISNFGTDSISWFTREGRNIITHYNCGKVL
QERFNAKNEKSSRIKQKTLGEVINELNNK
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgttaagagctcaaaagctacactcgctgaaatcatcggatatcactgcgattttgccc
actgaacagtcacaaaaattagttttagcaaagaaaaatggtgacgttgaagtttactct
cgagatggcaatacactcaaattatttcaagtatatcctgatctcttacaaaacgccaaa
aatgatcctttgcctccagtgattgaaaacttttattttgccaacgagctttcaactatc
tttgcacaatgtaaagaaaccttaattttattgagcactacaaatttacacgaatatgat
cgaataattgacagaagaggtataaaccattgctggctctttgaaaggtcacacaaaaat
aaagaagaaaagaatacttacctaatatattcaaccatcaatactgccaagatgagagta
ttaatatgggagggtaggacttacaaaaatatgatggaagcatcgttatcgtatagaaag
gaaaccattcggtccatatatcctggtgaaacaggaatcaccttagcgacagatttaggt
atctatcattggccatataataaaccctctctaatcagaatagaaaaaacagtgaaaaac
aaattcccaaaagatatgatatcagcattaaccgaactcaaagagcaggcggagaaagtc
attgaaaagaagcccaaaaagaatagccattttgatgctcaatccttttcttctatggat
agaatgtccaggaagtcgagcatgtcaagcttatggtataggaccataagaaacgagcgt
ggcaacaaaatacgatatacttttgaattggacggcaatgacgctaccccaatgataatt
gatggtgctacaaaaaaaattttcaaggtagagttaatgcataacaatgaggaaccattt
ttgatcgccactgaccatgctacattttccgaatcaaattccgaattcgatcacatgcaa
tatttgtcgtccaacctcctgatgttatataattcaagtaccatcaagtttgttgattat
gaaaatggatttacttttttgcaacaaaaaataccagaaggtataaaatgggtcaaaaat
ctctcgggaacctactttttagtatggacttcaaacgacgaagtacagttattctcttat
catgtagatgatggctctgaagatgatgatcaagagtctatttgtggtgacattaatgat
cctgatttttatcaactatggagaaaagtgcttttctataagttcttcattgattctcct
cattctaaggagttatgtgtttcggacaatccagaagaatccttggatatatgtgctatg
aaactaagggatttaacagtgatgtggtgtctaagaatcttcgataagtttcaaaattat
atggtacaactagaaaggagtagaaactcgagaatgattcgttctaaatgtgaagaaatg
atcatcaagagtatttttgacctatttataaaattttgggctccacctcaattagttatt
ttgaaagtttttccctcagccatttcaagcttggtattggaaattacgggccaagagcat
cactgcttgttgaaggaagccgaggaggttaaggaaacttatgacatcccgccacactta
ttgaacagatggtgtttaccttatttgactgacacaaggcgacatttgcaaaacttatta
agcaaggaaaacgatgacgaaagccgcataacttggtgctatcgcgaccgtgaaatcaag
caaagttttgatttctttctgatcagcaaccacgatgatgttgaccttaacacaatgtta
actctgatagatacagttttattcaaatgttatctttactataacccccccatggtgggt
ccattcattcgtgtagaaaaccactgcgattcccatgttatagtgaccgaattaaaaata
cgccatatgttcaaagatttaattgatttttactataaacgtggtaatcatgaagaagct
ttgaaatttctcacggatttggtcgatgagttggaaaatgataatactgaccagaaacaa
cgccaaaaaatcgatcacggtgtcaaaatattagttatttattatttgaaaaaattatca
aacccgcagttagacgttatattcacttatactgattggctactaaatcgacacaacgac
tcaattaaagaaatcctttcctcgatttttttttatgattctcaagcctgtagcagtagg
gaccatttgaaagtgtatgggtacatcaaaaagttcgacaagttacttgccatacaatac
ttagaatttgcaattagtacttttagattagagggaaataaattgcatactgtcctgatc
aagttatatcttgaaaacttagatattccctccacaagaatcaaattaaagtctttatta
gaaacaacatctgtctatgagcctagaacaattttaaagttattgaacgatgctattgag
agtggctctgaccagttgccaaccaatcaactaaatttcgtaaagtacctaaagattttc
cccttatcaaaattagaaaaccataaggaagctgtgcatatattacttgatgagatagat
gattacaaagcggcgacaagttactgtaacgacgtgtaccaaagtgattcgacaaaggga
gaagagcttctattgtacttgtacagcaagttagtctccatatacgattccaataggaac
tccaagctgattctgaattttttgcaagaccatggttcaaaattgaattcagcggaaata
tacaaaaatttacctcaagatatttccttgtacgatattggtagggtggtgtcgcaatta
ttaaagaagcacacatcaaagatggatgagaccagattagaaaaggcactcctccaggtt
gagcttgtggccaccacatacaaactcaatgaacgcatgtcatcgtatggagtcttatca
gatagccataaatgtcctatttgcaagaaagtaatttcaaattttggaacagattcgatt
tcctggttcaccagggaaggcagaaatatcatcacccattataactgtgggaaagtacta
caggagcggtttaacgctaaaaatgaaaagtcctcgagaattaaacagaagactttggga
gaagttataaatgagctaaataataagtaa
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