Sphingobium chlorophenolicum: Sphch_2014
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Entry
Sphch_2014 CDS
T01522
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sch
Sphingobium chlorophenolicum
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sch03019
]
Sphch_2014
03009 Ribosome biogenesis [BR:
sch03009
]
Sphch_2014
04131 Membrane trafficking [BR:
sch04131
]
Sphch_2014
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sch04147
]
Sphch_2014
Messenger RNA biogenesis [BR:
sch03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Sphch_2014
Ribosome biogenesis [BR:
sch03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Sphch_2014
Membrane trafficking [BR:
sch04131
]
SNARE
SNARE associated proteins
Others
Sphch_2014
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Sphch_2014
Exosome [BR:
sch04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Sphch_2014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_22
AAA_5
AAA_33
AAA_2
AAA_14
TIP49
NACHT
IstB_IS21
nSTAND3
AAA_28
AAA_18
RNA_helicase
Zeta_toxin
DUF815
Mg_chelatase
Sigma54_activat
AAA_30
AAA_24
AAA_7
AAA_19
AAA_3
AAA_17
TsaE
ATPase
Vps4_C
SLFN-g3_helicase
NB-ARC
ABC_tran
AAA_11
Parvo_NS1
AAA_25
Viral_helicase1
PhoH
Motif
Other DBs
NCBI-ProteinID:
AEG49691
UniProt:
F6EVD0
LinkDB
All DBs
Position
1:complement(2144742..2147033)
Genome browser
AA seq
763 aa
AA seq
DB search
MAEEETAGRRIQVANARPEDAGRGLARLPLAVMAELHLIEGDVIEIVGKRSTPARVVRPY
KEDEGLDVLRLDGLQRANAGVGSGDFVAIRKVDPRPAQRVVFAPAQNNLRLQGNPEALKR
VFFQRPLASGDIVATSGQQQVPPGDMPPQLRQMLAAPAYALQEIRLVVVSTVPKGVVHID
ADTEVELRAEYEEPRESRRADVTYDDVGGMADAIDQLREMVELPLRYPELFERLGVDPPK
GVLLHGSPGTGKTRLARAVANESEAEFFLINGPEIMGSAYGESEKQLREIFEAAAKAAPS
ILFIDEIDSIAPKRGNVTGETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRR
PGRFDREIIVGVPDERGRREILGIHTRGMPTGDKVDLSELARMTYGFVGADLAALTREAA
IEAVRRFMPRLNLEEGTIPPDVLEELSVTREDFMAAIKRVQPSAMREVMVQAPNIGWADI
GGLDDAQMRLKEGVELPLKDPDAFRRIGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANF
IATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPQVTERV
VNTILAEMDGLEELQSVVVIGATNRPTLIDPALLRPGRFDELIYVPVPDQAGRRRILSIH
TGKMPLADDVDLDMLAERTERFTGADLEDLVRRAGLVALRQSLSVEKVTQAHFEAALEDT
RASVTPEMEREYEQIQATLKQSVMQVDPIGFVAPGMLRGRGKE
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagaagagaccgcaggacgcaggatacaggtggccaacgcccggccggaggat
gcggggcgcggacttgcgcggctgccgctggcggtgatggcagaactccatctgatcgaa
ggcgatgtgatcgagatcgtcggaaagcgctccacccccgcccgcgtggtgcggccctac
aaggaggatgaggggttggacgtcctgcgcctcgacgggcttcagcgcgccaatgccggg
gtcggatccggcgacttcgtggcgatccggaaggtcgatccccgccccgcccagcgcgtc
gtcttcgcgcctgcacaaaataatctgcggctgcagggcaatcccgaagcgttgaagcgc
gtcttcttccagcggccgctggcatccggcgatatcgtcgccacgtccgggcagcagcag
gttccccccggcgacatgccgccgcaattgcgccagatgctggccgcgcccgcctatgcg
ttgcaggaaatccggctggtggtggtgtcgaccgtgccgaagggcgtcgtccatatcgac
gccgataccgaagtcgaactgcgcgccgaatatgaggagccgcgcgaatcgcgccgggcc
gacgtcacctatgacgatgtcggcggcatggccgacgccatcgaccagttgcgcgagatg
gtggaactgccgctgcgctatcctgaactgttcgaacggctgggcgtcgatccgcccaag
ggcgtgctgctccatggttcgcccggcaccggcaaaacccggctggcccgcgccgtcgcc
aatgaatcggaagcggaattcttcctgatcaacgggccggagatcatggggtcggcctat
ggcgagtcggaaaagcagcttcgcgagattttcgaggcggcggccaaggcggctccgtcg
atcctgttcatcgacgagatcgattccatcgcgcccaagcgcggcaatgtgaccggcgag
acggaaaagcggctggtcgcgcagttgctgacgctgatggacgggctggagccgcgcacc
aatctggtcgtcatcgccgccaccaaccggccggaggcgatagacgaggcgctgcgccgc
cccggccggttcgaccgggagatcatcgtcggcgtgcccgacgagcgcgggcggcgggag
atattgggcatccacactcgcggcatgcccaccggcgacaaggtggacctgagcgaactc
gcccgcatgacctatggtttcgtcggtgccgaccttgccgccctgacccgcgaggcggcg
atcgaggcggtgcgtcgcttcatgccgcgcctcaatctggaggaagggacgatcccgccc
gacgtgctggaggaactgtccgtcacgcgggaggatttcatggcagcgatcaagcgcgtc
cagccttccgccatgcgcgaggtgatggtgcaggcgccgaacatcggctgggccgatatc
ggcgggctggacgacgcgcagatgcggttgaaggaaggggtggaactgccgctcaaggat
cccgacgccttccgccgcatcggcatccgcccggccaagggcttcctgctctacggcccg
cccggcaccggcaagacgctgctggcgaaggcggtggcgcgggaggcgcaggctaatttc
atcgccaccaaatcctccgacctgctgagcaaatggtatggggagagcgagcagcagatc
gcccggctcttcgcccgcgccaggcaggtggcgccgacggtcatcttcatcgacgaactg
gacagtctcgtccccgctcgcggcggcggcctgggcgaaccgcaagtgacggagcgtgtg
gtgaacaccatcctggccgagatggacgggctggaggagttgcagtcggtggtcgtcatc
ggcgcgaccaaccggccgacgctgatcgatccggcgctgctgcgaccggggcggttcgat
gagctgatctatgtccccgtgccggaccaggccgggcgcaggcgcatattgtccatccat
accggcaagatgccgctggccgacgacgtcgatctggacatgctggctgagcgcaccgaa
cgcttcaccggcgccgatctggaggatctggtccgccgggcggggctggtcgcgctgcgc
cagtcgctgtcggttgaaaaggtcacgcaggcgcatttcgaagccgcgctggaggacacc
cgcgcctccgtcacgccggaaatggagcgcgaatatgagcagattcaggcgacgctgaag
cagagcgtgatgcaggtcgatcccatcggcttcgtcgcgcccggcatgctgcgggggcgc
ggcaaggaatga
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