KEGG   Siniperca chuatsi (mandarin fish): 122873518
Entry
122873518         CDS       T08948                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
schu  Siniperca chuatsi (mandarin fish)
Pathway
schu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:schu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122873518 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:schu03019]
    122873518 (exosc1)
Messenger RNA biogenesis [BR:schu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     122873518 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     122873518 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 122873518
NCBI-ProteinID: XP_044046233
LinkDB
Position
LG3:23817610..23822361
AA seq 194 aa
MSPMKLCVPGDKLCSVEDCIPGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGSQMVPISWCEMQCPRTHAKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagctgtgtgttccaggtgacaagctatgcagtgtagaagactgtatt
cccggcacaggagtatacctgcggcatggctacatatactcctcactagcaggctacgtg
ctcaggaaaaacgagggagaggagttaccagtgatctcagtggtgagggaaaccgaaacg
cagctactaccagatgtaggagcaatagtcacctgtaaggtgaccagcatcaaccccagg
ttcgccaaggtccacatcctttatgtaggttccacaccgctgaaggaccgcttcagaggg
acaatcaggaaagaagacgtgcgtgcaacagagaaagacaaggtggagacatacaaaagc
ttcagacctggcgacatcgtcttggcgaaagtgatctctctcggtgacgtgcagtctaac
tacctgttgacaacagcggagaatgaactgggggtggtggtggcacacagtgaagcaggt
tcccagatggttcccatcagctggtgtgagatgcagtgcccacggacgcacgccaaagag
ttccgcaaagtggcccgagtgcagccggagtatctacaggcatga

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