Siniperca chuatsi (mandarin fish): 122873518
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Entry
122873518 CDS
T08948
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122873518 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122873518 (exosc1)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122873518 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
122873518 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
122873518
NCBI-ProteinID:
XP_044046233
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Position
LG3:23817610..23822361
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AA seq
194 aa
AA seq
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MSPMKLCVPGDKLCSVEDCIPGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGSQMVPISWCEMQCPRTHAKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgacaagctatgcagtgtagaagactgtatt
cccggcacaggagtatacctgcggcatggctacatatactcctcactagcaggctacgtg
ctcaggaaaaacgagggagaggagttaccagtgatctcagtggtgagggaaaccgaaacg
cagctactaccagatgtaggagcaatagtcacctgtaaggtgaccagcatcaaccccagg
ttcgccaaggtccacatcctttatgtaggttccacaccgctgaaggaccgcttcagaggg
acaatcaggaaagaagacgtgcgtgcaacagagaaagacaaggtggagacatacaaaagc
ttcagacctggcgacatcgtcttggcgaaagtgatctctctcggtgacgtgcagtctaac
tacctgttgacaacagcggagaatgaactgggggtggtggtggcacacagtgaagcaggt
tcccagatggttcccatcagctggtgtgagatgcagtgcccacggacgcacgccaaagag
ttccgcaaagtggcccgagtgcagccggagtatctacaggcatga
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