KEGG   Stutzerimonas degradans: GOM96_05290
Entry
GOM96_05290       CDS       T08431                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
sdeg  Stutzerimonas degradans
Brite
KEGG Orthology (KO) [BR:sdeg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sdeg03400]
    GOM96_05290
Enzymes [BR:sdeg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GOM96_05290
    5.6.2.6  RNA 3'-5' helicase
     GOM96_05290
DNA repair and recombination proteins [BR:sdeg03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    GOM96_05290
SSDB
Motif
Pfam: Lhr_WH DEAD_assoc DEAD Helicase_C ResIII
Other DBs
NCBI-ProteinID: QGW20421
LinkDB
Position
1162821..1165379
AA seq 852 aa
MSLAERWFAARGWQPFTFQREVWQAVRDGESGLLHATTGSGKTYAVWLAALERFAQQMPR
SGQPAPLSLLWITPMRALAADTARALQAPLNELGIAWSIGLRTGDTGSAERARQGRRLPS
ALVTTPESLTLLLTRADARQAFAGLQMLVVDEWHELLGNKRGVQLQLALARLRRWQPRLI
VWGLSATLGNLPEALQVLLHPGRGRLVQGRIDKPLLVDSLLPESIERFPWAGHLGLRMLA
QVVGEIDAASTTLVFTNTRSQAERWYQALLDARPDWAGLIALHHGSLAREVRDWVEQGLK
QGALKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSGHAPGRTSRVTLVPTH
SLEVLEAAAAQQAIAERRIEARSAPQRPLDVLVQHLVSMALAGGFRPDELFAEVRQTWSY
RELDEAHWQWALAFVRHGGHSLTAYPDYQRVEPDDSGLWKVPSRRVALRHRMSIGTIVSD
ASLTVKFWARGGSGRSLGSIEEGFIARLRPGDCFLFAGRLLELVRVENMTVYVSRATGRK
AAVPRWNGGRMPLSSELADAVVEQLDAAARGEFDGAEMRLLQPLLQVQMAWSALPRSETL
LAELLRSREGWHLFLYPFAGRHVHLGLASLLAWRMARHQPLTFSIAVNDYGLELLSASEP
HWTSQLTPHLFDSRDLLHDVLASLNAGELARRRFREIARIAGLVFSGYPGAQKSARQLQA
SSGLFFDVFRQYDPDNLLLGQAEEEVLRQELDVERLEQTLRRLQARRLDLRQLQRPTPLA
FPLLVERFRESMSSEKLADRIRRMVTELDQAAGPGGYQADAAVMPAVEREMPRPRTPRAR
KDGTPNRRKRAP
NT seq 2559 nt   +upstreamnt  +downstreamnt
atgagccttgccgaacgctggttcgccgcgcgcggctggcagcccttcactttccagcgc
gaggtctggcaagcggtgcgcgacggcgaatccgggctgctgcacgcgaccactggctcg
ggcaagacctacgcggtgtggctggccgcgctggagcgcttcgcccagcagatgcctcgc
tcaggccagccggccccactcagcctgctgtggatcacccccatgcgtgcgctggcggcc
gataccgcccgcgcgctgcaagcgccgctcaacgaactcggcatcgcctggagtatcggc
ctgcgcaccggcgacaccggcagtgccgaacgcgcgcgccagggccggcggctgccgagc
gcgctggtcaccacgcccgaaagcctgaccctgctgctgacccgtgccgatgcccgccag
gcctttgccgggctgcagatgctggtcgtcgacgaatggcacgagctgctcggcaacaag
cgtggcgtgcagctgcaactggcgctggcacgcctgcgccggtggcagccgcggctgatc
gtctggggcctgtcggcgacgctcggcaatctgcccgaggcgctgcaggtgctgttgcac
cccggccgcggccggctggtccagggacgcatcgacaagccgctgctggtcgacagcctg
ctgcccgagagcatcgagcgcttcccctgggccgggcatctgggcctgcgcatgctggcg
caggtggtcggggagatcgacgcggcgtccaccaccctggtgttcaccaacacccgctcg
caggccgagcgctggtatcaggcgctgctcgacgcccgtccggactgggccgggctgatc
gccctgcaccacggctcgctggcgcgcgaggtgcgcgactgggtcgaacaagggctcaag
cagggcgcgctgaaggccgtggtgtgcacctccagcctggacctgggcgtcgacttcctg
ccggtcgaacgggtgctgcagatcggctcgccgaaaggcgtggcgcgcctgctgcagcgc
gccgggcgctccggccacgcgcccggccgcacctcgcgggtgacactggtgccgacccac
agtcttgaggtgctcgaagccgccgccgcgcagcaggcgattgccgaacgccgtatcgag
gcccgcagcgcgccgcaacgcccgctcgacgtgctggtgcagcatctggtcagcatggcg
ctggccggcggtttccgtcccgacgaactgttcgctgaagtccgccagacctggtcctat
cgcgaactggacgaggcgcactggcaatgggcgctggccttcgtgcggcatggcggccat
tcgctgaccgcctaccccgactaccagcgcgtcgagccggatgactcggggctgtggaag
gtgccgagccgacgcgtcgcgctgcgtcatcggatgagcatcggcaccatcgtcagcgac
gccagcctgacggtgaagttctgggccagaggcggcagcggccgctcgctgggcagcatc
gaggaaggcttcatcgcccgtctgcgccccggcgactgcttcctcttcgccggacgcctg
ctggaattggtgcgggtggagaacatgaccgtctacgtcagccgcgccaccggcaggaag
gccgccgtgccacgctggaacggcgggcgcatgccgctttccagcgagctggccgacgcg
gtggtcgaacagctggacgcggccgcgcgcggcgaattcgatggcgccgagatgcgcttg
ctgcagccactgctgcaggtgcagatggcctggtcggcgctgccgcgcagcgaaacgctg
ttggccgaactgctgcgctcgcgcgagggctggcacctgttcctctacccgttcgccggg
cgccacgtgcatctggggctggccagcttgctcgcctggcgcatggcccgccaccagccg
ctgaccttttccatcgcggtgaacgactacgggctggaactgctctcggccagcgaaccg
cactggacgagccagttgacgccgcacctgttcgacagccgcgacctgctgcacgacgtg
ctcgccagcctcaacgccggcgagctggcgcggcggcgctttcgcgagatcgcgcggatc
gccgggctggtattttccggctatcccggcgcgcagaagagcgcacgccagctgcaggcc
tccagcggtctgttcttcgacgtgttccgccagtacgatccggacaatctgctgctcggc
caggccgaggaggaagtgctgcgccaggagctggacgtcgagcggctggagcagacgctg
cgccgcctgcaggcgcgccgtctggacctgcgccaactgcagcggccgacgccgctggcc
ttcccgctgctggtggagcgtttccgcgaaagcatgagttcggagaagctggccgaccgc
atccgccgcatggtcaccgaactggaccaggccgccggccccggcggctatcaggccgat
gcggcggtcatgccggccgtggagcgcgaaatgccccggccacgcacgccacgcgcgcgc
aaggacggcacgcccaaccggcgcaagcgcgcgccatga

DBGET integrated database retrieval system