Staphylococcus delphini: NCTC12225_02181
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Entry
NCTC12225_02181 CDS
T06587
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sdp
Staphylococcus delphini
Pathway
sdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12225_02181 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdp03019
]
NCTC12225_02181 (rnr)
03016 Transfer RNA biogenesis [BR:
sdp03016
]
NCTC12225_02181 (rnr)
Enzymes [BR:
sdp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC12225_02181 (rnr)
Messenger RNA biogenesis [BR:
sdp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12225_02181 (rnr)
Transfer RNA biogenesis [BR:
sdp03016
]
Prokaryotic type
tRNA degradation factors
NCTC12225_02181 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
Rho_RNA_bind
OB_Dis3
RNase_II_C_S1
FRD2
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
VED63534
LinkDB
All DBs
Position
1:complement(2247326..2249683)
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AA seq
785 aa
AA seq
DB search
MNLKEEIIAIIKSADYEPMSVSDFQDALGLSSADSFRDLIKILVELEQTGMVTRTKQDRY
QKQQQKTNSGLVRGTLSQNKKGFAFLRPDDQEMEDIFIPPTKINRAMDGDVVLVEVKKSR
GDFRKGKFEGEVKAIESHSIKQVVGTFSEARHFGFVVPDDKRIMQDIFVPKGQELGAVEG
HKVLVQITQYSDGTNSPEGQISAILGHKNDPGVDILSIIYQHGIEIEFPDDVLKEAEDVP
ETIQPDELKGRRDLRDDLTITIDGADAKDLDDAIAVKKLDNGNTELTVSIADVSYYVTED
SALDREAYDRATSVYLVDRVIPMIPHRLSNGICSLNPEVDRLAMSCRMEIDAQGQVVKHE
IFESVIHSNARMTYDAVNRIITDKDAATRAQYPEIVPMLDLAQTLSQQLIAMRKKRGEID
FDIKEAKVIVNEEGIPKEVVTRERGEGERLIESFMLIANETVAEHFNKMEVPFIYRIHEQ
PKSERLRQFFDFITNFGIMVKGTGEDIHPSTLQNINEEIAGRPEDMVISTMMLRSMQQAR
YDADNLGHFGLAADYYTHFTSPIRRYPDLIVHRLVRKYLIEKSMDGRAMHEWEEKLPQIA
EHTSNRERRAIDAERDTDELKKAEFMIQHIGDEFEGVISSVANFGMFVELPNTIEGMVNM
QNMSDDYYHFDERQMALIGERKAKVYRIGDVVKVKVIHVDVDERQIDFQIVGMPIDVSSK
RERDPRGKTIQAKTKGNQFEKTDKKKKRQSRKGKNARQRDKSGNTQHKPFYKGKKVKKKA
RKKKK
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaaagaagagattatcgcaatcattaagagtgcagattatgaacctatgtct
gtatctgacttccaagatgcattaggactgagtagtgcggattcatttcgtgaccttata
aagattttggtagagttagaacaaacaggaatggtgacgcgtacgaaacaagaccgttat
caaaaacaacaacagaaaacaaattcaggtttagtaagagggacgttaagtcaaaataaa
aagggatttgcctttttacgtccagatgatcaagaaatggaagacatctttattccgccg
actaaaatcaaccgtgcaatggatggcgacgtcgtattagttgaagtgaagaagtcgcgc
ggtgattttcgtaaaggcaagttcgaaggtgaagtgaaggcgattgaatcccattcgatt
aaacaagttgtcggtacattttctgaagcgcgtcatttcggtttcgtggtgccagatgat
aaacgcattatgcaagatattttcgtgccaaaaggtcaagaactcggtgcggtagaaggt
cataaagtgttagtgcaaattacgcaatactcagatggtacgaacagtccagaggggcaa
atttcagcaattttaggccataaaaatgatccgggtgttgatattttatcgatcatttac
caacacggcattgaaattgagtttcctgatgatgtattgaaagaagcggaagacgtacct
gaaacgattcaacccgatgaacttaaagggcgtcgtgatttaagagatgacctgacgatt
acaatcgatggggcagatgcgaaagatttagatgatgccattgctgtgaaaaagttagac
aatggcaacaccgaattgacggttagcattgcggacgtgagctattatgtcacagaagat
tcagcgttagaccgtgaagcatatgatcgtgcgacaagtgtctatttagtcgaccgtgtc
attccgatgattccgcaccgattgagtaacgggatttgttcgttaaatcctgaagtcgac
cgtttagcgatgagttgtcgtatggaaattgatgctcaaggtcaagtggtcaaacacgaa
atctttgaaagtgtgattcattctaacgcacgtatgacttatgacgcggtaaatcggatc
attacagacaaagatgcagcgacaagagcacaatatccagaaatcgtgcctatgttagat
ttagcacagacgttatcacaacaattgattgcgatgcgtaaaaaacgtggcgaaatcgac
tttgacattaaagaagcgaaagtgatcgtgaatgaggaagggattccaaaagaagtcgtg
acacgagagcgcggtgaaggtgaacgtttaatcgaatcatttatgttgattgcgaacgaa
acagtggcagaacatttcaataaaatggaagtgccattcatttaccgtattcacgagcag
ccgaaatcagaacgtctccgtcagttctttgattttattacgaactttggcattatggtc
aaagggacaggcgaagatattcatccaagtacacttcaaaacattaacgaagaaattgct
gggcgtccggaagatatggtcatttcaacaatgatgttacgttcgatgcaacaagcacgt
tatgacgccgataacttaggccatttcggtttagcggcagattattatacgcatttcaca
tcaccgattcgtcgttatccagacttgattgttcatcgtttagtgcgtaaatatttaatc
gaaaagtcaatggatggccgtgcaatgcatgaatgggaagaaaagctcccgcaaatcgct
gagcatacgtccaatcgtgagcgtcgtgcgattgatgcagaacgtgatacagatgaactg
aaaaaggcagagttcatgattcaacatattggagatgaatttgaaggtgtcattagttct
gtcgcgaattttggtatgtttgtagaattgccaaacacgattgaaggtatggttaacatg
caaaatatgtctgatgactattaccattttgatgagcgacaaatggcattgattggtgaa
cgaaaagcgaaagtttaccgcattggtgatgtcgtaaaagttaaagtcattcatgttgat
gtggatgaacgtcaaatcgatttccaaattgtaggcatgccaattgatgtgagctcgaaa
cgtgaaagagacccacgtggtaaaacgattcaagcgaaaacaaaaggcaatcaatttgag
aaaactgataaaaagaaaaagcgtcaatcacgtaaaggtaaaaatgcgagacaacgtgac
aaatcaggtaatacacagcataaaccattttataaaggtaaaaaagtaaagaaaaaagca
cgtaaaaagaaaaaataa
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