Seriola dumerili (greater amberjack): 111238411
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Entry
111238411 CDS
T05606
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
111238411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sdu04121
]
111238411
Ubiquitin system [BR:
sdu04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
111238411
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4757
CH
PDZ_6
LIM
PDZ
PDZ_2
Motif
Other DBs
NCBI-GeneID:
111238411
NCBI-ProteinID:
XP_022623611
LinkDB
All DBs
Position
Unknown
AA seq
1315 aa
AA seq
DB search
MEWRQQTSVSCADAFNEAQRWIEEVTGKLFGCNDFRAALENGVLLCDLINQLKPGIIKRV
NRLSTPIAGLDNVNVFLKACGKLGLNESQLFHPGDLQDLSTRVTLRRDESNRRLKNVLIT
IYWLGRKAHLDAFYSGPQLNFKAFEGLLGLALSKALDEGSNVFVKDSGDRECWYPEREER
QRMRLSYKRENSVDSVESLDSRALRQNSEGCGSDAEAEQVFRMETTRTSVHQNKGCVPPP
LLRRKQGREENGPLSRAYQNQVRPERPVQVNPGWIWSKSLSDIPMVYPIRKFPNDNAVYD
VGQDTNRARGWSQENARKSSVTVKDSEAQWQDDLTKWKNRRRSTKSDLRRKSQDREHVIS
QMTNGALTNLEKNDAQGGLLKRDQQSPRRHAPRPYSTSPPSKSSSSDLRPHTRALLARGY
ATETPFTPTATLSPHKAAHTQGSSVGAMPASDGSILGEETHFASLASDGAGVTTPSLDCP
FSSQTQVKVQGASAPFQPTPELAQPEHVFTNQISTLVTTIQPNETTKSTSTRDPTASMSS
HKELQFCIDPKVPTFCTDAVHLTAADALEDLSHQNHKPQEESQKTSLEPALDQGRGRQAA
GVYKYLSRTGSWSGSASLPRGYRRSEGSSRLSSAITARPFGTKQSRGFSLPRLHNLDDNQ
GLLLNREKEVVLSPPTKSLPRTAASHLRGQYQASIRQKKTNQAKQNGTDKGEEGKGASLS
SQTSFQTNGHHHQPHTQLLPQPYSNLQSHLHNKSSTLPSTKVDHSDMRVSLALKPNSRPD
FGFQTHWDSTGARVKFIQPGSPAELCQLCVDDEIVAVDGVPVAHMNYSQWKDTMTYALQT
GSLTMDVRRYGNKDWSTSEGSHHSQPGQSRMTINLTAAAPVLIGCPDHHANSTASADTTV
TKASKFNRQADDVVKGNMVDGGLADSHRTTTSKDYNKIIRKNQKRRAEFFKQKGGSESAI
SDLQVPSLSPSSSSWSWDREEDRRRQEKWQEEQERLLQEQYQRDQERLEAEWRRAQHDAM
GDSGRKSGKTFHMTKASTQLHVNALSNKSREEEQSPERDALKVAELKPHTNAQGVQNVKI
TEHDWAVEPCGFAQLSPAHRAKSLSTPALAGPHKHTRGDQRKRKGQSASKAELDRQQILE
EMKKRTQLLTDNSWIRQRSSSFYKEPICAGVPLKRYESMDDLDTLRQSPVSIATFSYPRP
HSAAAGYFAPSRKSSSRYSTGAILPPRNASMDSAHHGRMVSGRRTCCVCQRVLGSGAAMV
IEALSLCFHLACFQCVGCRRHLAGTETGVQVRIRNTKPYCELCYFHLKYTGAPSM
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgccagcagaccagtgtcagctgtgcagacgcgttcaacgaggctcaacgc
tggatcgaggaggtgactggaaaattgtttggttgcaacgatttccgtgctgccttggag
aatggagtcctgctttgcgacctgatcaaccagttgaaacctggcatcattaagagagta
aacaggctttctactcccatcgctggcctggataatgtgaatgtattcctgaaagcctgt
gggaaactgggactgaatgagtcacagctgtttcatccaggagacctgcaggacctgtct
actcgtgtaacactcaggcgagatgaaagcaacagaagactcaaaaatgttctgatcact
atctactggttgggtcgcaaagctcacctagatgcattctacagtggtcctcagcttaac
ttcaaggcctttgaggggctgttaggtttggccttgtccaaagctctagatgagggcagt
aatgtgtttgtgaaggacagcggggacagagagtgctggtacccagagagggaggaacgt
cagcgcatgaggctgagctataagagagagaactctgtggacagtgtcgagtctctggac
tcccgggccctccgccaaaacagtgaaggttgtggaagtgacgcagaagctgagcaggtc
ttcaggatggagaccacacggacctcagtccatcaaaacaaaggctgtgtaccaccacca
ctcctacgaagaaaacaaggacgggaggagaacggtccactgtccagagcatatcaaaac
caggtcaggcctgagagaccagttcaggtcaaccctggctggatttggagtaaatcactc
agtgacatcccgatggtttatcccatacgtaaatttcctaacgacaatgccgtttatgat
gtgggccaggacacgaatagagcaagagggtggagccaagaaaacgcacggaagagcagt
gtgactgtcaaggacagtgaagctcagtggcaggatgacttaacaaagtggaagaatcgt
cgcaggagcaccaagtctgacctccgcaggaagtctcaggacagagagcatgtcattagc
cagatgaccaatggtgctttgactaaccttgagaagaatgacgctcaaggtggactgcta
aagagagaccagcagtcgccacgcaggcatgccccccgtccttactccacctctcctcca
tcaaaatcatcaagctctgatctccggccacacactcgagctctgctggcccgcggctac
gccacggagacacctttcacccccacagctacactgagcccccataaagcagcccacact
cagggatcgtcggttggagccatgcctgcctctgatgggagtatcttgggagaggagacc
cactttgcctccttggcttcagatggagcaggagttactacaccttctctggactgccct
ttcagctcccagacccaagtcaaagtccagggcgcctcagctcctttccagcccacacct
gaactggcccagccagaacatgtttttacaaaccaaatctccactctggtcacaaccata
cagccaaacgagaccacaaagtcaaccagcaccagggatcctactgcatctatgtcgagt
cacaaggaactccagttctgcatcgatccaaaagttccaactttctgcactgatgcagtt
catctgacagcagctgatgctctggaggacctgtcccaccaaaaccacaagccccaggaa
gagagccagaagacatctctggaaccagctttggatcaaggtagaggccggcaggctgca
ggtgtctacaagtacttgtccagaactggttcatggtccggttcagccagccttccgcgt
ggttaccggcggtccgagggctcatcccgtctctcttctgcaatcacagctagacccttt
gggaccaagcagtcgagagggttctcactgccaagactgcacaacctagatgataaccag
ggtctgctgttgaaccgtgagaaagaagttgttctttctccacccaccaaatctttgccc
agaactgcagccagccatctgaggggtcagtaccaggcttcaatcagacagaagaaaacc
aaccaggcaaagcagaatggtacagacaagggggaggaggggaaaggggccagtctgtcc
agccagacctccttccagaccaacggccaccaccatcagccccacacccagctcctgccg
cagccttattcaaatctacagtcccacctccacaacaaaagctccactctgccgtctaca
aaggtggatcacagtgacatgagagtgagcctagcccttaaacccaacagtcgaccagac
tttggtttccagactcactgggactccacgggggcgagagtaaaattcattcaacccggc
agtccagcagagctttgccagctgtgtgtggacgatgagattgtggctgttgatggagtt
ccggtggcacacatgaactacagccagtggaaggatacaatgacatatgccctgcaaacc
ggcagcctgaccatggacgttcgacgctatggcaacaaggattggagcaccagcgagggg
agtcatcacagccagccgggccagagcaggatgaccatcaatctgactgccgcggcgccc
gttctgataggttgccccgatcaccatgccaacagcactgcctctgcagacaccacagtc
acgaaagcatcgaaattcaacaggcaggcagacgatgttgtaaaaggtaacatggtggat
ggagggcttgctgacagccacaggacaaccacaagtaaagattataataaaattattagg
aaaaatcagaaaaggagagcagaatttttcaaacagaaaggaggctccgaatctgcgata
tctgacctccaggtgccatcgctcagcccctcctcatccagctggtcgtgggaccgcgag
gaggaccgaaggcgtcaggagaagtggcaggaagagcaggagcgcctcctacaggagcaa
taccagcgggatcaggagaggctggaggcagagtggcggagggcacaacatgatgcaatg
ggagactcgggcaggaagtcagggaagaccttccacatgaccaaagccagcacgcagctc
catgtgaatgcattgtcaaacaaatcgagagaagaggagcagagccctgagagagatgcg
ctgaaagtagcagaattaaaacctcatactaatgcacaaggagtgcagaatgtcaagatt
actgaacatgactgggctgtggaaccttgtggctttgctcagctgtctcctgcacacagg
gcaaagtccttgtctaccccggcattagccggcccccacaaacatacaagaggtgatcag
aggaaaagaaaaggacagtctgcgtctaaggctgagctagacaggcagcagattttggag
gagatgaagaaaaggactcagctcctgaccgacaacagctggatacgtcagcgcagcagc
agcttttacaaggaaccgatctgtgccggggttccgctgaagaggtatgagtctatggac
gacctggatactttgcgccagtccccagtctcgatcgccacattcagttaccctcgtccg
cactcggctgccgcgggttattttgccccgagcaggaagtcgtcctcccgctacagcact
ggagcaatattacccccgagaaatgcatccatggactccgctcaccatggcaggatggtc
agtggcaggaggacttgctgtgtgtgtcagcgtgtcctgggtagtggtgcagccatggtc
atagaggcccttagtctctgcttccacctcgcctgtttccagtgtgtgggctgccgccga
catctcgcaggaactgagactggagtccaggttcgaatccgaaacacgaagccctactgt
gagctctgctatttccatctcaagtacactggtgccccttccatgtga
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