Shigella dysenteriae Sd197: SDY_3345
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Entry
SDY_3345 CDS
T00306
Symbol
truB
Name
(GenBank) tRNA pseudouridine 5S synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sdy
Shigella dysenteriae Sd197
Brite
KEGG Orthology (KO) [BR:
sdy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdy03016
]
SDY_3345 (truB)
Enzymes [BR:
sdy01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SDY_3345 (truB)
Transfer RNA biogenesis [BR:
sdy03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SDY_3345 (truB)
Prokaryotic type
SDY_3345 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB-C_2
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
ABB63338
ShiBASE_China:
SDY3345
UniProt:
Q32BG7
LinkDB
All DBs
Position
complement(3102544..3103488)
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AA seq
314 aa
AA seq
DB search
MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG
EATKFSQYLLDSDKLYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE
QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI
RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL
LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE
GRVAPRRLVVEYPA
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtcctcgtcgtcgcggtcgcgacattaacggcgttttgttgctggataaaccg
cagggtatgtccagcaacgatgcgctgcaaaaagtgaaacggatttataacgccaaccgt
gccgggcataccggtgcgctggacccactggcgaccggcatgttgccgatttgcctcggg
gaagcgacgaaattttcccagtatctgctggactccgacaaactctatcgggtgattgcg
cgtcttggacagcgtaccgatacttctgatgccgacggacaaatcgttgaagaacgtccg
gtaacctttagcgcagaacaactggcggcggcactggatactttccgtggcgatatcgaa
cagatcccatcgatgtattcagcactgaaataccagggcaaaaaactgtacgaatatgcg
cgtcagggcattgaagttccgcgtgaagcgcgtccaattaccgtttatgaattgctgttt
attcgccatgaaggcaatgagctggagctggaaattcactgctcaaaaggcacttatatc
cgcactatcattgacgacctgggtgagaaactcggctgcggcgcgcatgttatttacctg
cgccgtctggcggtaagtaaatatccggttgaacggatggtgaccctggagcacctgcgt
gaacttgttgagcaagctgaacagcaggatattccggctgcggagttacttgatccatta
ctgatgccaatggacagtccagcttcggactatccggtggtgaatcttccgttaacgtct
tctgtttacttcaaaaatggtaacccagttcgtacatctggcgcgccgctggaaggactg
gttcgcgtcacggaaggtgagaacggcaagtttatcggtatgggcgaaattgacgatgaa
ggacgcgttgcgcctcgtcgtctggtggttgaatacccggcgtaa
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