Sphingomonas echinoides: B18_05505
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Entry
B18_05505 CDS
T06681
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
sech
Sphingomonas echinoides
Pathway
sech02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
sech00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
B18_05505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sech03021
]
B18_05505
Transcription machinery [BR:
sech03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B18_05505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
Rv2175c_wHTH
HTH_24
MerR
Sigma70_r3
HTH_17
FaeA
HTH_AsnC-type
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
QLD73399
LinkDB
All DBs
Position
1182351..1182869
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AA seq
172 aa
AA seq
DB search
MSAGDVSNSEFVGSLYRDHRGWLLAWLNRNLGCRQRAEDLSQDTFVRLLGRPELPGLREP
RAFLAKVARGLMIDHFRRAALEQAYLAELALVPEAEQPSAEEQYLILEDLREIDRLLGTL
SLKARSAFLYSRLDGMPHAEIAERLGVSVPRVRQYLAQGLRQCYIALYGEPR
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggcgggtgacgtcagcaacagcgaattcgtgggtagcctgtaccgggaccaccgc
ggctggctgcttgcctggctgaaccgcaacctcggctgccgccagcgcgccgaagacctc
agccaggacaccttcgttcgcctcctcggccgcccggagctgcccggcctgcgcgaaccg
cgcgcgttcctggcgaaggtggcgcgcggcctgatgatcgaccacttccgccgcgccgcc
cttgagcaggcctatctcgccgaactggcgctggttccggaagcggagcagccttcggcc
gaagagcagtacctgattctcgaggacctccgcgagatcgatcgcctgcttggcacgctg
tcgctgaaggcgcgtagcgcgtttctctatagccgcctggacggcatgccccacgcggag
atcgccgagcgtctcggagtctcggtgccgcgcgtgcgccaatacctggcccagggtctg
cgccagtgctacatcgccctctacggagagccccggtga
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