Salmonella enterica subsp. enterica serovar Bareilly: SEEB0189_020530
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Entry
SEEB0189_020530 CDS
T02739
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
seeb
Salmonella enterica subsp. enterica serovar Bareilly
Pathway
seeb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seeb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SEEB0189_020530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seeb03019
]
SEEB0189_020530
03016 Transfer RNA biogenesis [BR:
seeb03016
]
SEEB0189_020530
Enzymes [BR:
seeb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SEEB0189_020530
Messenger RNA biogenesis [BR:
seeb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SEEB0189_020530
Transfer RNA biogenesis [BR:
seeb03016
]
Prokaryotic type
tRNA degradation factors
SEEB0189_020530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
MetOD2
OB_Dis3
TFIIE_beta
Rho_RNA_bind
Sucrose_synth
Motif
Other DBs
NCBI-ProteinID:
AGQ60540
UniProt:
A0A4D6PBE8
LinkDB
All DBs
Position
complement(4218664..4221102)
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AA seq
812 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVELNIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EDVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGNKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGESKNAGKRRQVGKKVNFEPDSAFRGEKKAKPKAAK
KDVRKAKKPSAKTQKIAAATKAKRAAKKKAAE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagcagaaaaatacgcgaatcctatcccgagc
cgggaatttatcctcgaacatttaacgaaacgtgaaaaaccggccagtcgcgaagaactg
gccgtagaactgaatattgaaggcgaagagcagcttgaagccttgcgtcgccgcctgcgc
gcgatggagcgcgacggacaactggtctttacccgccgccagtgctatgcgctgccggaa
cgcctcgacctgctgaaaggcaccgtgatcggtcatcgtgatggttacggtttcttacgt
gtcgaaggccgcaaagacgatctgtatctttccagcgagcagatgaaaacctgtattcat
ggcgatcaggtgctggcgcagccgctgggcgccgatcgtaaaggtcgccgcgaagcgcgt
atcgtccgtgtactggtaccgaaaaccagtcagatagtcgggcgttatttcaccgatgcg
ggcgtcggctttgtagtgccggacgacagccgtctcagcttcgacattcttatcccgcca
gaagacgtcatgggcgcgcggatggggttcgtggtcgtggttgaactgacccaacgtcca
actcgccgtactaaagcggtagggaaaatcgtcgaagtgctgggcgacaatatgggcacc
ggtatggcagttgatatggcgctgcgtacccatgaaataccctacatctggccgcaggcg
gtagagcagcaggtcgccgggctgaaagaagaggtgccggaagaggcgaaagtcggtcgt
gtcgatctgcgcgatttgccgctggtcactattgatggcgaagatgcccgtgactttgac
gacgcggtttactgtgagaaaaaacgcggcggcggctggcgtttgtgggtcgctattgct
gacgtgagctattatgtacggccgccaacgccgctggatcgcgaggcgcgcaatcgcggc
acgtcggtttacttcccgtcacaggttgtcccaatgttgccggaggtgctctccaacggt
ctgtgttcgctaaacccgcaggttgacaggctgtgtatggtctgtgaaatgactatctcg
gcgaaaggtcggctgaccggctacaaattctatgaagcggtgatgagctcccatgcgcgt
ctgacctataccaaagtctggcatatgctgcagggcgatcaggatctgcgtgaacaatat
gcgccgctggtgaagcatattgaagagctgcacaacctctacaaagtgctggataaagcg
cgtgaagagcgcggggggatctcgtttgagagcgaagaggcgaagtttatctttaacgcc
gaacgtcgcattgagcgtatcgaacagacccagcgtaatgacgcgcataagcttatcgaa
gagtgcatgatcatggcgaatatctcggcggcgcgctttgtcgaaaaagctaaagagccg
gcgctattccgtattcatgataagcccaccaccgaagcgatcacctcattccgttccgta
ctggcggagctggggttggagctgccgggcggaaataaaccggaaccgcgcgattatgcc
gaactgcttgaatcgattgccgacaggccggacgccgaaatgctgcaaactatgctgctg
cgttcaatgaagcaggcgatttacgatccggaaaaccgcgggcactttggcctggcgttg
cagtcttatgcgcactttacctcgccgattcgccgctatccggatctttctttgcaccgc
gccattaagtacctgctggctaaagagcaagggaacaagggcaacaccacagaaacgggc
ggttatcactactcgatggaagagatgttgcagctcggccagcactgttcgatggcggaa
cgccgcgctgatgaagcgacgcgtgatgtctccgactggctgaaatgtgactttatgctg
gatcaggtaggcaacgtctttaagggcgtgattgccagcgtcaccggtttcggcttcttt
gtccgtcttgatgaactgtttatcgatgggctggtacacgtttcctcactggataacgat
tactatcgcttcgatcaggtagggcaacgtctgattggcgaatccggcgggcagacatat
cgcctgggcgaccgggtcgaggtacgcgtcgaagcggtgaatatggacgaacggaaaatt
gactttagcctgatctccagcgagcgcgcaccgcgtaacgtcggcaaaacggcgcgtgaa
aaagcgaaaaaaggtgaaagtaaaaacgccggtaaacgtcgtcaggtaggtaaaaaagtt
aacttcgagcctgatagcgccttccgcggcgagaaaaaagcgaagccgaaagcagcgaag
aaagacgtgagaaaagcaaaaaagccatcggctaaaacgcagaaaatagccgcagcgacc
aaagcgaagcgtgcggcgaagaaaaaagcggcagagtga
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