Prodigiosinella confusarubida ATCC 39006: Ser39006_005985
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Entry
Ser39006_005985 CDS
T05290
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sera03021
]
Ser39006_005985
Transcription machinery [BR:
sera03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Ser39006_005985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
AAA_34
Spc24
Motif
Other DBs
NCBI-ProteinID:
AUH03718
UniProt:
A0A2I5T4A2
LinkDB
All DBs
Position
complement(1290055..1292958)
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AA seq
967 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDARMVTLIFPASGENRLYSRSDAPITRVMFNPGDT
ITGHEGWQLRIDDIRDENGLRTYVGRRLDDDSPVELREVFLDSKLTFNKPQDRLFAGQID
RMDRFALRYRARNHQHEQALQPWGGLRGMRASLIPHQLHIAREVGQRHAPRVLLADEVGL
GKTIEAGMIIHQQLLAGRAERVLIVVPETLQHQWLVEMLRRFNLLFSLFDDERYAEARLD
SDNPFETEQLIICSLGFVQRNATRFGQLLHAHWDLLVVDEAHHLVWSEAAPSPEYQAIEH
LASATPAVLLLTATPEQLGQESHFARLRLLDPNRFHDYHEFIAEQQQYRPVADAVTLLLA
GNKASSAELNALSELLGEQDIEPLLKSINSDSEDREQARHELITMLMDRHGTSRVLFRNT
RQGVKGFPQRVLHQIKLPLPAQYQTAIKVSDIMNAGKTPESRARDMLYPEQIYQQFEDEN
ATWWSFDPRVEWLLNYLTTHRDKKVLVICAQAATALQLEQVLRTREAIRAAVFHEGLSIL
ERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGRLDRIG
QTQEIQILVPYLENTAQALLVRWYHEGLDAFEHTCPTGRTIYDSHYEQLITRLTTPGEPE
GLEEFISACRQQHEALKQQLEQGRDRLLEMHSNGGEQAQELCQAIAEQDNDVNLVNFALN
LFDIIGIHQEDRSDNMIILTPSDHMLVPDFPGLPQDGCTITFDREQALSREDAQFISWEH
PLIRNGLDLILSGETGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKKLQLTRFLPPTPV
RLLMDRKGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQAEVHDMLQKAEPLVEVHARQ
LITDAQHHADQQLRRELERLEALKAVNPNIRDDELQALETQREQVLSNLQQANWRLDAIR
LVVVSHQ
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaactgggattggga
accgtagtggcagtagatgcccggatggttaccctgatcttccctgccagcggtgagaac
cgcctctattccagaagtgatgccccgatcacccgagtgatgttcaaccctggtgatacc
atcaccggccatgagggctggcaactgcggatagacgatatccgcgatgaaaatggtctg
cgtacctatgtgggtcgtcgactggatgacgatagcccggtcgagctgcgggaagttttt
cttgatagcaaactcacattcaacaaaccacaggatcgcctgttcgccggacagatcgat
cgcatggatcgctttgcattgcgttaccgcgcccgcaatcatcagcatgagcaggcgctg
caaccctggggtggtctgcgcgggatgcgtgccagcctgattcctcatcagttgcatatt
gcccgtgaagtaggacagcgacatgctccacgcgtactactggcggacgaagttggtctg
gggaaaactatcgaagccggtatgatcattcaccaacaactgttagcaggccgggctgag
cgcgtacttattgtggtaccggaaacgctgcaacatcagtggctggtagaaatgctccgc
cgcttcaatctactgttttcactgtttgacgatgaacgctatgccgaagccaggctggat
agcgacaacccctttgaaacagagcaattaattatttgttcgctgggttttgtacagcgc
aatgccacacggtttgggcaactactgcatgcccactgggacttgctggttgtggatgaa
gcccaccatctggtctggagcgaagcggcacccagcccggaatatcaagcgattgagcat
ctggccagcgctactccggcggtattattgctaacggcgacaccggaacagctaggtcag
gagagccactttgcccgtctgcgactgctggatccaaaccggtttcacgactatcacgaa
tttatcgccgagcaacagcaatatcgcccggtggccgatgccgtcactctgctattggcc
ggtaacaaagccagttccgccgaactgaacgccttgagtgagttactgggcgagcaagac
attgaacccttactgaaatctatcaacagcgatagcgaagatcgggaacaggcccgccac
gaactgatcacgatgctgatggatcgtcacggcaccagccgcgtactgttccgcaatact
cgtcagggagtaaagggcttcccacagcgggtactgcatcagattaaacttccgctgccg
gcgcaatatcaaaccgccatcaaagtgtccgatatcatgaacgcggggaaaaccccagaa
tcccgcgcccgggatatgctctatccggaacagatctaccagcagtttgaagatgaaaat
gcaacctggtggagcttcgatccgcgcgtggaatggctgctcaactatctgaccactcac
cgggacaaaaaagtgctggtgatttgcgctcaggccgccaccgcgttacaactggaacag
gtattacgcacccgtgaagctatccgggccgccgtcttccacgaaggattgtctattctg
gaacgtgaccgggccgccgcctattttgcttctgaagaagaaggcgcgcaggtgctgatc
tgttcggaaatcggctcagaaggtcgcaacttccagtttgccagccatcttgtcatgttt
gatctccccttcaacccggatctgctggaacaacgtatcgggcgtctggaccgtatcggt
cagacgcaggaaatccagattctggtgccttatctggaaaataccgcacaagcgttgctg
gtacgctggtatcacgaaggtctggatgcctttgagcatacctgccctaccggacgcacc
atttatgacagccactatgaacagctgataacccggctgacgacaccgggtgaaccggaa
gggctggaagagtttatcagcgcctgccgccagcagcatgaagcgcttaagcagcaactg
gaacaaggccgtgatcgactgttggaaatgcactccaacggtggtgaacaggcgcaggaa
ctgtgccaggcgatcgccgagcaggacaacgacgtcaatctggtaaacttcgcactcaat
ctgttcgatattatcgggattcatcaggaagaccgcagtgacaatatgatcatactaacg
ccgtccgatcatatgctggtgccggattttcccggactcccgcaggatggctgcactatc
actttcgaccgggaacaggcgttatcccgtgaagacgctcagttcatcagttgggaacat
ccgctgattcgcaacgggctggatctgatcctgtccggggaaaccggaagttgtgccgtt
tctctgttgaagaacaaagcgttaccggtaggcacactgctggcggaactggtctatgtg
gtagaagcccaggcaccgaaaaaactccagttaactcgctttctgccaccgaccccggta
cgtctgctgatggatcgtaaagggacgaatctggctgcgcaggtggagttcgaaagtttc
aaccgtcagttgaatgccgtgaatcgtcatacatccagcaaattggtaaatgcggtacag
gcggaagtccacgacatgctgcaaaaagcggagccattggtagaagtacacgcacgccag
ctcattaccgatgcccaacaccatgccgatcaacagttacgccgtgaactggaacgtctg
gaagcgctaaaagcggttaaccccaacatccgcgatgatgagttgcaggcgctggaaacc
cagcgagaacaagtattaagcaacctacaacaggccaactggcgtctggatgcaatccgt
ctggtggtggtttctcaccagtaa
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