Salmonella enterica subsp. enterica serovar Typhi P-stx-12: STBHUCCB_16420
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Entry
STBHUCCB_16420 CDS
T01741
Name
(GenBank) ATP-dependent RNA helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sex
Salmonella enterica subsp. enterica serovar Typhi P-stx-12
Brite
KEGG Orthology (KO) [BR:
sex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sex03019
]
STBHUCCB_16420
Enzymes [BR:
sex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
STBHUCCB_16420
Messenger RNA biogenesis [BR:
sex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
STBHUCCB_16420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
NACHT
AAA_16
ResIII
PhoH
NTPase_1
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AEZ45337
LinkDB
All DBs
Position
complement(1595772..1599692)
Genome browser
AA seq
1306 aa
AA seq
DB search
MLPKSFMTEQSTLTLQVLQQRLDALMLRDKQRFSRRLHGVKKVKNPDAQQAIFQTMAKEI
EQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKIC
MELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMT
DGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDP
ERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDIL
IFMSGEREIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETS
LTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSE
DDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGA
ITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERP
VDKQQASDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREW
QDIYTQLRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEYTGARNARFSI
FPGSGLFKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQG
AVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRA
EVEELEHKSRRRDILVDDDTLFEFYDQRISHDVISARHFDSWWKKISRETPDLLNFEKSM
LIKEGAEKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQ
IPGLRRELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVT
VDREDWHWDQVPEHLKITFRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQ
SGLHIWSFGELPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLL
LLNIPSPIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDKLIDANGGPVWSEAGF
TALHEKVRAELNDTVVDIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVY
RGFVTGNGFKRLGDTLRYLQAIEKRLEKLAVDPHRDREQMLKVESVQQAWQQWINKLPPA
RREDDDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccaagagctttatgactgaacaatctacgttgacgcttcaggtgttacagcag
cggctggatgcactgatgctgcgcgacaaacagcgcttttcgcgccgcctgcatggcgta
aagaaagtaaaaaatcctgatgcgcaacaggccattttccagacgatggcgaaagaaatt
gaacaggctgcgacgcaggtcgctctccgcgaagcggcgcgcccctcaatcacttatccg
caaaatctgcctgttagccagaagaaacaggacattctggaagcggtccgcgatcatcag
gtggtgatcgtggcaggggaaaccggttccggtaaaaccacccagttgccgaaaatttgt
atggaactgggacgcggaattaaaggacttattggacatactcaaccgcgtcgtctggcg
gcgcgcaccgtcgctaaccgcattgccgaagagttgcaaacggagcctggcggctgcatc
ggctataaagttcgtttcagcgatcatgtcagtagcaacaccatggtcaaactgatgacg
gacggtatcctgctggcggaaatccagcaggacaggctattgatgcagtacgacaccatc
attattgatgaagcgcatgaacgcagcctgaatattgacttcttgctcggctatctgaaa
gagcttctgccgcgtcgccccgatctgaaagtgattattacctctgcgaccatcgacccg
gaacgcttctcgcgccactttaataacgcgccgattatcgaagtctctggccgaacgtat
cccgtagaagttcgttatcgccccatcgtggaagaggctgacgacactgaacgcgatcag
ctacaggcaattttcgacgctgttgatgaactggggcgtgaaagtcctggcgatatcctg
atttttatgagcggagagcgggaaatccgcgataccgccgatgccctgaacaagctgaac
ttacggcataccgaagtgttgccgctgtatgcacgcttgtcgaacagcgaacagaaccgc
gttttccagtcgcacagcggacgccgtatcgtgctggcgactaacgtggcggaaacctcg
ctgacggtgccgggtatcaaatatgtgatcgatcctggcactgcgcgcatcagccgctac
agctaccgcactaaagtgcagcgcctgccgattgaaccgatctcacaggcttccgccaat
cagcgtaaagggcgttgcggacgcgtatcggaagggatctgcattcgtctgtattcggaa
gatgactttttgtcacgcccggaatttaccgacccggaaattctacgtaccaacctggcg
tcggttattttgcagatgaccgccctgggactgggtgacatagccgccttcccgtttgtc
gaagcgccggataagcgcaatattcaggatggcgtgcgtttgttggaagagctgggggcg
attaccgccgacgaacagcaaacggcatataagctgacgccgctgggccgacaattatcc
cagttgccggtcgacccgcgcctggcgcgtatggttctggaagcgcaaaaacatggctgt
gtgcgcgaagcgatgatcattacttccgcactctctattcaggatccgcgcgagcgccca
gtggataagcagcaggcttccgatgagaaacaccggcgtttccatgataaggaatccgat
tttctggcgtttgttaacctgtggaattacctcggcgagcaacaaaaggccctgtcgtcg
aatcaattccgccgtctgtgtcgcaccgactatctgaactatttacgcgtgcgtgagtgg
caggatatctatacccaactgcgtcaggtggtaaaagaactggggattccggtaaacagc
gaacccgcagaataccgggaaattcacgttgcgttgttaacggggctgttgtcgcatatc
gggatgaaagatgccgataaacaagagtacaccggcgcgcgtaacgcccgattctctatt
ttccccggatccggtttattcaaaaaaccgccgaaatggacaatggtcgccgagctggtg
gaaaccagccgtttgtgggggcgcatcgctgcccgcattgagccagaatgggtggaaccg
gtagcccagcacctgattaaacgttcatatagcgaaccgcactgggagcgggcgcaaggc
gcggtgatggcgacggaaaaggttactgtctacggtctgccgattgtcgccgcgcgcaag
gtgaattatagccagattgacccggcgttgtgtcgcgagttgtttatccgccatgcgctg
gtggagggggactggcaaacccgtcacgccttcttccgtgagaatctaaaattgcgtgcg
gaagtcgaggaacttgagcacaaatctcgccgccgcgatatcctggtggatgacgatacc
ctgtttgagttttatgaccagcgtattagccatgacgttatttccgcccgccactttgat
agttggtggaaaaaaatcagccgcgagacgccggatctgctcaactttgaaaaaagtatg
ctgattaaagaaggcgcggaaaaaatcagcaaactggattacccgaatttctggcaccag
ggcaatctcaagctgcgtttgagctatcagtttgaaccgggcgcggatgctgacggcgtg
accgtccatattccgttgccgctacttaaccaggttgacgagagcggttttgaatggcag
atcccagggctgcgccgtgaattagtgattgcgctgattaaatcgttgccaaaaccggta
cgtcgcaactttgttccggcgccaaactatgctgaagcgtttttaggtcgcgtaacgccg
ctggagctgccgctgctggacgctctggagcgtgaactgcgccggatgaccggcgtcacg
gtcgatcgggaagactggcattgggatcaggtgcccgagcatctgaaaatcacgtttcgc
gtggtgaatgacaaaaacaagaaactgcaggaagggcgttcgctcgccgagcttaaaaat
gcgctgaaaggcaaagtgcaggagacgctctcggcggtagcggatgacggcatcgagcag
agcgggctgcatatctggagtttcggcgagctgccggaaagctacgaacagaaacgcggt
aattataaagtgaaggcgtggccggcgttagtggatgagcgtgacagcgtcgctatcaaa
ttgtttgataatccgctggaacaacaacaggcgatgtggtgcggtttacgccgtctgctg
ttgctcaatattccttcaccgattaagtatctgcatgagaaattgccgaataaagccaag
ctggggctgtactttaacccgtacggcaaagtactggagttgattgatgactgtatcgcc
tgcggggtagataagctgatagatgccaacggcgggccggtgtggagcgaagcaggtttc
accgcgctgcacgaaaaggtacgcgccgagctgaatgatactgtggtggatatcgcgaag
caggttgagcggatcctgacgaccgtattcaatatcaataagcgtctgaaagggcgggtg
gatatgagcatggcgttggggctttccgatatcaaggcgcagatgagcggtctggtatac
cgtggttttgtgactggcaacggctttaaacgtctcggcgatacgctgcgttatctgcag
gcaattgaaaagcggctggagaaactggctgtcgatccgcaccgcgatcgggagcaaatg
ctgaaagtcgaaagcgtccagcaggcgtggcaacaatggataaataaattgcctccagcg
cgtcgcgaagatgatgatgttaaagagatccgttggatgattgaagaactgcgtgtcagt
tatttcgcccaacagctcggtacgccttatcctatttccgataagcgtattttacaggcc
atggatcagattacggcctaa
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integrated database retrieval system
