Streptococcus equi subsp. zooepidemicus ATCC 35246: SeseC_00104
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Entry
SeseC_00104 CDS
T02355
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sezo
Streptococcus equi subsp. zooepidemicus ATCC 35246
Pathway
sezo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sezo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SeseC_00104 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sezo03021
]
SeseC_00104 (rpoC)
03400 DNA repair and recombination proteins [BR:
sezo03400
]
SeseC_00104 (rpoC)
Enzymes [BR:
sezo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SeseC_00104 (rpoC)
Transcription machinery [BR:
sezo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SeseC_00104 (rpoC)
DNA repair and recombination proteins [BR:
sezo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SeseC_00104 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AEJ24322
LinkDB
All DBs
Position
104736..108344
Genome browser
AA seq
1202 aa
AA seq
DB search
MQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWECACGKYKRIR
YKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDMSPRALEEVI
YFAAYVVIDPKDTPLEPKSLLTEREYREKIQEYGHGSFIAKMGAEAIQDLLKRVDLVTEI
AELKEELKTATGQKRIKAVRRLDVLDAFHKSGNKPEWMILNILPVIPPDLRPMVQLDGGR
FAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNGRRGRPITGP
GSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPREMAIELFKP
FVMREIVAREFAGNVKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEP
VLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHILNPKDGKPV
VTPSQDMVLGNYYLTMEDAGREGEGMVFKDKDEAVMAYRNGYVHLHSRVGIAVDSMPSKP
WEDSQRHKIMVTTVGKILFNDIMPEDLPYLQEPNNANLTEGTPDKYFLEPGQNIQEVIDS
LPLNVPFKKKNLGNIIAETFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVGIADIPVIDN
KAEIIEAAHHRVEEINKAFRRGLMTDDDRYVAVTTTWREAKEALEKRLIETQDPKNPIVM
MMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFSTHGARKGMT
DTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRAITDGKEVTETLEERLQGRYT
RKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSVFTCATRHGVCRHCYGINLA
TGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQEIFEARNPKG
EAVITEVKGTVIEIEEDASTRTKKVYVQGKTGMGEYVVPFTARMKVEVGDEVNRGAALTE
GSIQPKHLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRKVRVMDPGDT
DLLPGTLMDIADFTDANKEIVISGGIPATSRPVLMGITKASLETNSFLSAASFQETTRVL
TDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNIEPQAINEVEVIEGAEATEEPAII
EE
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcacattagcttcaccaagtaaggtccgttcatggtcctatggtgaagttaaa
aaacctgaaacaatcaactaccgtacattaaaaccagaacgtgagggtctttttgacgaa
gtcatttttgggccaaccaaggattgggagtgtgcgtgtggcaaatataaacgtattcgc
tataaaggtattgtctgtgaccgttgtggggttgaggtaactcgtgcaaaggttcgtcgt
gaacgcatgggacacattgagctaaaggcacctgtgtcacatatctggtattttaaaggg
atcccatctcgcatgggcttgactcttgatatgagtccgcgtgcccttgaagaggttatc
tactttgccgcttatgtggttattgatccaaaggatacaccgcttgagcccaaatcacta
ttgacagagcgtgaatatcgtgaaaaaatccaagaatatggacatggctcattcatcgct
aagatgggggcagaggctattcaggatctcctaaagcgtgttgatttggtcacagaaatt
gctgagctaaaggaagaattaaaaacagcaacaggccaaaagcgtatcaaggctgttcgt
cggttagatgtgcttgatgcctttcataaatcaggtaataagccagaatggatgatcctg
aatatcttgccggtcattccaccagatcttcgtcctatggtgcaattggacggtggtcgc
tttgcagcctcagacttgaatgacctttaccgtcgtgtcattaatcgtaataaccgttta
gcacgtttgctggagcttaatgcgcctggtatcattgtgcaaaatgaaaagcgtatgctg
caagaggcggttgatgctttgattgataatggtcgtcgtggtcgtcctattacaggacct
ggtagtcgtccgctgaaatccttgagccacatgcttaagggaaaacaaggacgttttcgt
caaaacctgcttggtaagcgtgttgacttctcaggtcgttcagttattgctgtaggtcca
acgcttaaaatgtaccaatgtggtgtgccacgtgagatggctattgagcttttcaagcca
tttgtgatgcgtgagattgttgcccgcgaatttgccggcaacgtcaaagcagctaagcgt
atggttgagcgtggcgacgagcgtatctgggatattctagaggaggtcatcaaggaacac
ccagtgcttcttaaccgcgcacctactcttcacaggcttggtattcaggcctttgagcca
gttcttattgatggtaaggctcttcgtcttcacccacttgtatgtgaggcctacaatgct
gactttgacggagaccaaatggccattcacgtgccgctgtcagaggaagcacaggcagag
gctcgtttgttgatgcttgctgccgagcatattcttaaccctaaggacggtaagccagtt
gtaacaccttctcaggatatggtgctaggaaactactacctaacaatggaagatgctggt
cgtgaaggcgaaggtatggtctttaaggacaaggacgaagcggtaatggcttaccgtaat
ggctatgttcaccttcatagtcgtgttggtattgctgttgacagtatgccaagcaagcct
tgggaggatagtcaaagacacaaaatcatggtgacaacggtcggtaagatcttgtttaat
gacatcatgccagaggaccttccttacctccaagagccaaataatgctaacctgacagag
ggcactccagataaatatttcttggagccaggtcagaatattcaggaggttattgatagc
ttaccgctcaatgtgccattcaagaagaaaaatcttggtaacatcattgcggaaaccttc
aagcgtttccgtacaacagaaacatcggcctttcttgaccgcctgaaggaccttggctac
tatcattcaacccttgccggcttgacggttgggatcgctgatattccggttattgacaac
aaggctgagatcatcgaggctgctcaccatcgtgtagaagaaattaataaggccttccgt
cgaggcttgatgacagatgatgaccgctatgttgcagtcacaacaacgtggcgtgaagca
aaagaagcccttgagaagcgtttgattgaaacacaggatcctaagaacccaatcgttatg
atgatggactcaggagcgcgtggtaacatctctaacttctcacagctggctggtatgcga
ggcttgatggctgcccctaacggccgtattatggagcttcctatcctgtctaacttccgc
gaaggtttgtctgttttggaaatgttcttctcaactcatggagctcgtaagggtatgact
gatacggctcttaagacagctgactcaggctatctgacacgtcgtttggttgatgttgcg
caagatgtcatcattcgtgaggacgattgtggtacagaccgaggccttcttattcgtgct
attacagatggtaaggaggtcactgaaacacttgaggagcgcttgcagggtcgatacact
cgtaaatcagtcaagcaccctgagactggtgaggtactgattggtgctgaccaattaatc
actgaggacatggctcgcaagattgttgatgctggtgttgaagaggttaccattcgctcg
gtatttacctgtgctactcgtcatggtgtttgtcgtcactgttatggtatcaacctagca
acaggtgatgcggttgaggttggtgaggctgttggtactatcgctgcccaatctatcggt
gagcctggtactcagctgaccatgcgtaccttccacacaggaggggttgcctcaaatacc
gatatcacgcagggtcttcctcgtatccaagaaatctttgaagcgcgcaaccctaaaggg
gaagcagttatcacagaggttaagggtactgttattgagattgaagaggacgcatcaact
cgtactaagaaggtctacgttcaaggtaaaacaggcatgggtgaatatgtcgtgccattt
acagcgcgtatgaaggttgaggttggtgatgaggtcaatcgtggagctgcccttacagaa
gggtcaatccagcctaagcacctccttgaggttcgtgataccttgtcagttgagacctac
ttgcttgctgaggttcaaaaggtttaccgcagccaaggggtagaaatcggggacaagcac
gttgaggttatggttcgtcaaatgcttcgcaaggtacgtgtcatggatccaggtgataca
gatcttctgccaggaaccttgatggacattgcagacttcacagatgccaacaaggagatt
gttatctccggtggtattcctgcaacctctcgtccagtgcttatgggaatcacaaaagcc
tcacttgagactaattcattcttgtcagcagcttccttccaggaaactactcgcgtgctg
acagacgctgctatccgaggcaaaaaagaccatctattggggcttaaggaaaatgttatc
atcggtaagatcattccggcaggtactggtatggctcgttaccgtaacattgaaccacaa
gctatcaatgaggtcgaggttatcgaaggagctgaagctacagaagagccagcaattatt
gaggaataa
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integrated database retrieval system
