Sinorhizobium fredii USDA 257: USDA257_c29030
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Entry
USDA257_c29030 CDS
T02188
Name
(GenBank) putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
USDA257_c29030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c29030
Enzymes [BR:
sfd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
USDA257_c29030
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
USDA257_c29030
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AFL51474
UniProt:
I3X6G8
LinkDB
All DBs
Position
3050780..3051754
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AA seq
324 aa
AA seq
DB search
MAISSSKKPHGTPPPDPMPARVDPCIAMLVDKPPKGPEWAFEVKWDGYRLALHIEPDRIR
IITRGGYDWTHRFPSITAETRQLRLKTAILDGEAVVLDEQGRSDFGMLQRALGRRPSAHE
PGEIILFAFDLLYLNGRDLRRLPQRERRRMLEPLVAGHEGAIRLSEEVQADGDEFLRVVC
ELGLEGIIAKHREGPYRSGRNDAWRKITCTRRDSFVIIGFEPSTVTDAIGRLLLAARRGG
ELVYVGGCGTGWTREESVKLRELLGEIETDSPAVNLKRKGAVFTEPFLVAEIAYRAWTED
GKLRHPSFKGIRERADDLTIYELK
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggccatatcttcatcaaaaaagccgcatggcacgcctccgccagaccctatgccggcg
cgcgtcgacccgtgcattgcgatgctcgtcgacaagccgccaaaaggtccggaatgggcc
ttcgaggtgaaatgggatggctatcggttggcgcttcatatcgaacctgacagaatccgc
atcataacgcggggtgggtacgactggacgcaccgctttccgtcgatcaccgccgagacg
cggcagctccggctcaagactgccatacttgatggcgaggcggtcgttctcgacgagcag
ggccgatccgatttcggcatgttacagcgcgccctcggccgccgtccctccgcgcatgag
cccggcgaaatcatcctctttgcttttgatctcctctatctcaatggccgcgacctgcgc
cgactgccgcagcgggagcgccgacgcatgttggagccacttgttgcaggccacgagggc
gccattcgcttgtctgaagaggttcaggcagacggcgacgagtttctccgggtcgtctgc
gagctcgggctcgaaggtattatcgcgaagcaccgcgaggggccatatcgctcaggccga
aacgatgcgtggcgcaagatcacctgcacccgccgcgacagtttcgtcatcatcggcttc
gagccatcgaccgttaccgacgcaatcgggcgtctgctgttagcggcgcgcagaggcggc
gaactcgtctatgtcggaggctgcggaaccggctggacgcgtgaagagtcggtgaagctt
cgggagttgctaggggagatcgagacggattcgccggcggtgaacctgaagcggaagggc
gcggtcttcacggagcctttcctcgtcgcggaaatagcgtatcgcgcctggacggaagac
ggcaagctgcggcatccgtcgttcaaggggatcagggagagggcggatgatttgacgata
tacgaactgaagtag
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integrated database retrieval system
