Serratia fonticola GS2: AV650_14605
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Entry
AV650_14605 CDS
T04716
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfg
Serratia fonticola GS2
Pathway
sfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV650_14605 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfg03019
]
AV650_14605 (rne)
03009 Ribosome biogenesis [BR:
sfg03009
]
AV650_14605 (rne)
Enzymes [BR:
sfg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AV650_14605 (rne)
Messenger RNA biogenesis [BR:
sfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AV650_14605 (rne)
Ribosome biogenesis [BR:
sfg03009
]
Prokaryotic type
rRNA processing factors
AV650_14605 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ALX94708
LinkDB
All DBs
Position
complement(3204667..3207987)
Genome browser
AA seq
1106 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYASHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCTGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRDSVSAIEKRQGGVKAVIVPNDQMQ
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMAQPQDDAPVERKREQPALASFSLSQDAPPQ
EEEPVVSKPAVAAKPAVASAPAAEAKPGLLSRLFGGLKSLFAGEETPVVEAKPVVAEKTE
DSDNRRQDRRGQRRQGSGRKGERGERKERGEGRDNRERGDREPRENREPREPRENRDDQR
RNNRRNAQQQTAPAAANTEVQTEEAAKVQREDQQQRREQRAERQRRRQEEKRQAPQDVKV
PETAEVVVASHSNDEDEDRHQQPTQRRQRRPLTQKVRVLSAEEELHRAAEELLAPKAPVA
KVEESQAPVVAENVKLLPQTIAAQSEDDAQADNRGNGENGMPRRSRRSPRHLRVSGQRRR
RYRDERYPNQSPMPLAGAFASPEMASGKVWISYPVAQAAVYVEHEEAQAPVAVETVAVAV
APVAVEAAPVQPVVNEAPSVAETAPAVAESVAAPVVETPVETAPVETVADVVVAAEPAAV
VVDETVVSETTEDETVADAAVQAEPVIAEPAVQEPVVEETVVEAVVAAPAEATVTAEPEV
VSAQPEAAPAPVQAAPVVAQPQPALYKHIATAPMTKAPAPDYQPEAAKTSEWQRPSFNFD
GKGSAGGHAAANQATAPATKPQPVND
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
ggacagcggctgtacgatctggatattgaaagccctggccatgagcagaaaaaagcgaat
atttacaaaggcaaaatcactcgaattgaacctagtctcgaggccgcgttcgttgattac
ggcgctgaacgacatggtttccttccgctaaaagaaatcgctcgcgaatacttcccaagc
aattacgcttcccatggtcgcccaaacatcaaagatgtgctgcgtgaaggccaggaagtc
atcgttcaggttgataaagaagaacggggtaataaaggcgccgccttgaccaccttcatc
agcctggccggtagctatctggttctgatgccgaacaatccgcgtgccggtggtatttcc
cgccgcatcgaaggtgacgaccgtaccgaactgaaagaagcgctctcctcgctgcaattg
ccagacggcatgggtctgattgtccgcaccgctggcgttggcaaatctgccgacgctctg
caatgggacctgtcattccgcctcaagcactgggaagcgattaaaaaagccgccgaaggc
cgccctgctccgttcctgatccaccaggaaagcaacgttatcgtgcgagcattccgcgat
tacctgcgtccggacatcggcgaaatcctgatcgacaacccgaaggtactcgatctggcc
aaagagcacatcgctgccctgggccgcccggacttcagcagcaagattaaattgtacagt
ggcgaaatcccgctgttcagccattaccaaatcgaatcacagatcgagtccgcgttccaa
cgtgaagtgcgtctcccttccggtggttccatcgtgatcgacaccaccgaagccttgacc
gctatcgatatcaactccgcgcgtgcaacccgcggtggcgacatcgaagagaccgcattc
aataccaacctggaagccgcagatgaaattgctcgccaattgcgcctgcgcgacctgggt
ggcctgatcgttatcgactttatcgatatgaccccggttcgtcaccagcgtgaagtggaa
aaccgtctgcgcgatgccgtccgccaggatcgtgcccgcattcagattggccgtatctct
cgcttcggcctgctggaaatgtcccgtcagcgcctcagcccgtcactgggtgagtccagc
caccacgtgtgcccgcgctgtaccggtaccggcaccatccgtgataacgaatcgctggcg
ctgtctattctgcgcctgatcgaagaagaagcgctgaaagagaacaccaaagaagttcac
gccatcgtaccggttcaggttgcttcctacctgctgaacgaaaaacgtgattctgtcagc
gcgatcgagaagcgccagggtggcgtgaaagcggtcatcgtgccaaacgatcagatgcag
actccgcattactccgtgctgcgcgtacgcaagggtgaagaaacaccaaccctgagctac
ctgctgccgaagctgcatgaagaagaaatggcccagccgcaggatgatgcgccagtcgag
cgcaaacgcgagcagccggctctggcttccttctctctgtcacaggatgctccaccgcag
gaagaagagcctgtggttagcaagcctgccgttgccgccaaaccggcagttgcatcagcc
cctgctgctgaagccaaacctggcctgttgagccgtctgtttggtggcttgaagtcactg
ttcgccggtgaagaaacgccagtggttgaagctaaaccggttgtagctgagaaaacagaa
gacagcgacaaccgccgtcaggatcgtcgtggccaacgccgccagggttctggccgtaaa
ggtgaacgtggcgagcgtaaagaacgtggcgaagggcgtgacaaccgtgaacgtggtgat
cgtgagccacgcgaaaatcgcgagccgcgtgaaccacgtgaaaaccgtgacgaccagcgc
cgcaacaaccgccgtaacgcacagcaacaaaccgcaccagcggctgccaataccgaagtg
cagactgaagaagcagccaaggtacagcgcgaagatcagcaacagcgccgtgaacagcgt
gccgagcgtcaacgccgtcgtcaggaagaaaaacgccaggctccgcaagacgtcaaagta
ccagaaactgcggaagtcgttgttgctagccatagcaatgacgaagatgaagaccgtcat
cagcagccaacgcagcgtcgtcaacgccgtccactcacgcagaaagttcgcgtcctgtcg
gcggaagaagaactgcatcgcgccgctgaagagctgttagcgcctaaagcgccagttgcc
aaggtagaagaaagccaggctccggtagtggctgagaacgttaaactgttgccacagacc
attgcggcccagtctgaagatgacgcgcaagctgataaccgtggaaacggtgaaaacggc
atgccacgtcgttctcgtcgttctccacgccatctgcgcgtcagtggtcagcgtcgtcgt
cgctatcgtgacgagcgttatccgaaccagtcgccaatgccgttggccggggcgtttgcc
tcaccagagatggcttcaggcaaggtttggatcagctatcctgtggcacaagccgccgtc
tacgttgaacacgaagaagctcaagcgccagtggcggtagaaaccgtagccgttgctgtt
gcaccggtggctgttgaagccgctcctgttcagcctgtagtcaacgaagcgccaagcgta
gctgaaaccgctccggcagtagctgaatcggtagcagcaccggtagttgaaaccccggta
gaaactgcaccggttgaaaccgtagccgacgttgtcgtcgctgccgagccagccgctgtt
gtggtagatgaaaccgttgtcagtgaaacaactgaggatgagacggttgcagatgccgca
gtacaagctgaacccgttatcgctgagccagcagtgcaagagcctgtagttgaagaaact
gtagtggaagccgttgtggccgcccctgcagaggctactgtaaccgcagagccggaagtc
gtgtcagcacagccagaggctgctccagctccagtgcaagcggccccagtggttgcacaa
ccgcaaccggcactctacaagcatatcgctaccgccccgatgaccaaagcgcctgcgccg
gattatcagccggaagccgcgaagaccagcgagtggcagcgcccttccttcaactttgac
ggaaaaggttctgctggcggccatgcagcggcgaatcaggccactgctccagcgaccaaa
ccgcagccggttaacgactaa
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