Scleropages formosus (Asian bonytongue): 108924244
Help
Entry
108924244 CDS
T04919
Name
(RefSeq) collagen alpha-2(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108924244
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108924244
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108924244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
108924244
NCBI-ProteinID:
XP_018590994
LinkDB
All DBs
Position
21:complement(6896539..6941349)
Genome browser
AA seq
1493 aa
AA seq
DB search
MKTSVHYRSFLFFLVSVAQVSFIRCQGQIIGDDLSCSEDGLTYSNRDIWKPEPCRICVCD
SGAILCDEIMCDEVTYCEKMTIPEGECCPICQDDQVPALVSKGQKGEPGDVPFVTGITGR
PGPMGPPGAPGGRGERGNQGKPGPRGPPGYDGEPGVPGQPGEPGPPGHPTHPEGQLASHM
EVGFDEKSRALGNIGMVPGARGEAGARGPPGPTGQPGPSGMQGPPGEAGDPGQMGSAGPR
GPEGPQGKPGEDGESGKAGNAGELGFPGSPGARGFPGMPGPPGLKGHKGHQGPIGLKGEH
GGVGSKGAPGPTGPLGAPGGQGPRGMPGERGRIGPGGTPGRHGPPGNIGKPGPLGPLGLS
GPPGFPGAPGSKGEPGPTGVRGPEGPQGQRGETGHQGRPGPTGVRGPVGTDAGPGTKGPV
GTVGPQGPAGLLGPPGPPGPQGSTGQPGIKGQLGDVGSPGFKGEAGPKGEPGPPGAQGPI
GPQGEEGKRGARGDTGSLGPLGSVGERGAPGNRGFPGADGLPGSKGAQGDRGIPGTSGPK
GATGDPGRTGEPGLPGARGLTGNPGIQGAEGKPGPLGEPGEDGRPGPGGSLGTRGPPGPM
GLPGPKGFNGDAGKAGEQGSPGPQGQRGAPGKDGEEGPAGSAGPPGPAGERGEQGPPGVN
GFQGLPGPPGPPGEPGKPGDQGIPGEGGAVGQIGPRGERGTPGERGELGSLGLPGAKGIP
GAPGPDGPKGSPGPTGILGDPGPPGLQGMPGERGISGPPGPKGERGSGGEKGAEGTAGND
GARGLPGPVGPPGPHGPSGEKGEAGPQGPPGPHGARAGPGSRGEPGPTGPVGFAGPPGPD
GQPGVKGETGEPGQKGDAGSPGPQGLAGAQGPPGPTGVAGLKGGRGTQGAPGPTGFPGSP
GRVGPPGPVGPLGQPGPIGLPGKEGPRGLRGDHGPPGRQGERGAAGPPGSPGDKGDGGED
GPTGPDGPPGPAGTTGQRGIVGLPGQRGERGMAGLPGPPGPPGKTGAPGTQGDKGPPGPL
GLPGANGPRGDPGPDGSAGGDGPPGKEGVIGARGDRGDPGPEGLAGAPGAPGSPGPVGAL
GAPGKRGDPGSRGPLGPPGSAGKRGLIGPQGPRGDKGDLGEHGERGQKGHRGFTGLQGLP
GSPGTPGEQGAPGIFGPQGQRGPPGPVGPPGREGYIGTPGPMGPPGSRGFVGDIGPEGPP
GDPGPPGPPGSPGPPTAAMEDIFGEQTDYDDSPPPPPEFSEDEALPNSNTSASFPADPGV
QATLKALSSQIESMRSPDGSKNHPARTCEDLKQCYPLKKSGEYWIDPNQGSAEDAIKVFC
NMDTGETCISANPTSIPRKTWWSSSSPVGNKPIWFGLNMNGGTQFTYGNKEQAPNSVTVQ
MTFVRLLSKEASQTITFHCKNSVAYKDENAGNLKKAIILKAANDLELKAEGNSRFRYTVT
EDGCSQATGTWGKTVFEYRTQKTARLPIVDIAPMDIGQADQEFGMDIGPVCFV
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgaagacctctgtgcattacaggagttttctattttttcttgtttctgtggctcaggtt
tcattcataagatgccagggtcaaatcataggagatgacctgagctgttccgaggatgga
ctaacctacagtaatagagacatatggaagccggagccgtgtcgaatctgtgtgtgtgac
agtggtgctatcctctgtgatgaaatcatgtgtgatgaggtgacatactgcgagaagatg
actatccctgagggggaatgctgccccatctgtcaagatgaccaggtgccagccctagtg
agcaagggccagaaaggggaacctggggatgttccatttgttacgggtattacagggcgg
ccagggccaatggggcctccgggtgcaccaggtggtagaggagaacgtggaaaccaagga
aaaccaggtccaagaggccctcctgggtacgatggagagccaggtgtcccaggacaacca
ggggaaccaggcccgcctggacaccctacgcaccctgaagggcaactagcttcacacatg
gaggtcggatttgatgagaaatcaagagccttgggcaacattggaatggtgccaggagca
cggggagaagcaggagcaagaggccctccagggccaactggtcaaccaggaccatcggga
atgcaagggccccctggtgaggctggtgatccaggacaaatggggtctgctggtccaaga
gggcctgagggtcctcaaggcaaaccaggggaagatggagaatctggaaaggcaggaaat
gcaggagaactgggattccccggatcgccgggagcaagaggatttccaggtatgccaggt
ccaccaggtttaaaaggccataagggtcaccaaggaccaattggcctaaaaggtgaacat
ggaggtgttggatcaaagggtgcaccaggccctactggacccctgggtgcacctggtggt
cagggaccaagaggaatgccaggggagagaggcagaataggcccaggtggaacaccggga
aggcatggtccacctggaaacatcgggaagccgggtccactgggccctttgggtttaagt
ggtcccccaggatttccaggagccccaggcagcaagggtgagcctggacccacaggagtc
cggggacctgagggccctcaaggccaaaggggagagacaggacatcaaggcagacccggt
ccaactggcgttcgaggtccagttgggacagatgcaggccctggaaccaagggtcctgtt
ggtacagtgggtcctcagggtcctgctggcctacttggtccacctggcccaccgggacct
cagggaagcactgggcagcctgggatcaaaggtcaactgggtgatgtcggatcccctggt
ttcaaaggagaagctggtcctaaaggtgaaccaggtccacctggggctcaagggccaatc
ggaccccaaggagaagaagggaagaggggggcacgtggagatactggttctctgggccct
ctgggttctgttggtgaaagaggtgctcccgggaacagaggattccctggtgcagatgga
ttaccaggttctaagggtgcgcaaggtgatcgtggaattcccggaacatctggacctaaa
ggtgccacaggtgaccctggacgcactggcgaaccaggtctccctggtgcaaggggtctg
accggcaatccaggcatccagggtgcagagggaaagccaggaccactgggagaaccaggg
gaggatggacgaccaggacctggaggatcacttgggaccagaggcccacctggaccaatg
ggtttacctggaccaaagggttttaatggagatgcaggcaaggcaggagagcaaggatct
ccaggacctcaagggcaaagaggtgctcctgggaaagatggagaagaaggccccgcaggg
tcagctgggccaccaggccctgctggtgaaagaggagaacaaggaccacctggtgttaat
ggtttccagggtttgccagggcctcctggcccacctggagagccaggaaaaccaggagat
cagggtattcctggagaaggcggagctgttggtcagataggtcccaggggagagcgaggt
accccaggtgagaggggagaacttggctctcttggtctgccaggggccaagggtattcca
ggagcacctggaccagatgggccaaagggtagccctgggccaactggtattcttggtgac
cctggacccccaggtctccaaggcatgccaggtgagaggggtatttctggtcctcctggc
cctaaaggtgaaaggggttctggtggcgagaaaggagcagaaggtactgctggaaatgat
ggtgcaagaggtcttcctggtccagttggaccaccaggaccacatggacctagtggagag
aagggagaagctggcccccaaggcccacctggacctcatggagcgagagcaggtccgggg
tcacgtggagaacctggtcctactggtcctgttggatttgctgggcctcctggtcctgac
ggtcaacctggtgtcaaaggtgaaacaggagaacctggtcagaagggtgatgctgggtct
ccaggtccccaggggttggctggtgctcaagggcctccagggcccaccggtgttgctggc
ctaaaggggggtagaggaacacaaggagcaccgggtccaactggttttcctggatcacca
ggaagagttggccctcctggtccagttggtccacttggacaaccaggacccataggtctt
cctgggaaggagggtccacggggtcttcgtggtgaccatggaccccctggacgtcaagga
gagcgaggtgcagctggtccaccaggtagcccaggagacaaaggagatggaggagaagat
ggacccacaggccctgatggtccaccaggtccagctggaactacgggccaaagaggaatt
gttggacttcctggacagaggggagaaagggggatggcaggtcttccaggtcctcctggt
cctccaggaaaaacaggggcccctggaactcagggagacaaaggacccccaggtccactt
ggtttaccaggtgcaaatggaccccgaggtgaccctggtccagatggatctgcaggaggt
gatggcccaccaggcaaggagggagtcataggagccaggggagacagaggggatccaggc
ccagagggacttgctggtgctccaggggctcctggctctcctggcccagttggtgctctt
ggtgctcctggaaaaagaggagacccaggttcaagaggaccccttgggcccccgggttca
gcaggaaagcggggattaataggaccccaaggaccaagaggggataaaggtgaccttgga
gaacatggggagcgaggacagaaaggtcacaggggcttcactggattacaaggtttacct
ggctcacctggaacacctggtgagcaaggtgctccaggaatttttggacctcaagggcaa
agagggcctcctggaccagttggacctccaggaagagaagggtacattggaaccccaggg
ccaatgggaccaccgggatcacgtggatttgttggtgacattggaccagaaggaccacct
ggagatcctggtcccccagggcctcctgggtccccaggtcctccgacagctgcaatggaa
gatatatttggagaacaaactgactatgatgacagccccccacctccaccggaatttagt
gaagatgaagctcttccaaacagcaacacatcagcttccttcccagccgaccctggagtc
caggctactctgaaggccctcagcagccaaatagagagcatgcgtagtcccgatggcagc
aaaaatcaccctgcccggacctgtgaagacttaaaacagtgctacccattaaagaagagc
ggggaatattggattgaccccaaccaagggagtgcagaggatgccatcaaagtgttctgt
aacatggacactggtgagacctgcatctcagcaaacccaaccagcataccacgcaaaaca
tggtggagctcctccagtcctgttggcaataagcctatttggtttggattgaatatgaat
ggtggcacacagtttacctatggaaacaaagaacaagcaccgaactccgtcactgtccaa
atgacatttgttcgcctgctgtcaaaagaggcatctcagacaatcactttccactgcaag
aacagtgtggcatacaaggatgagaatgctggaaatttgaagaaagccatcatcctcaag
gcggccaacgaccttgagctcaaagcagagggaaacagtcggttccgatacaccgtcacg
gaggatggctgctcgcaagccactggcacctgggggaagactgtgtttgagtacaggaca
cagaaaacggcaaggcttcccattgtggacatagccccaatggacattggccaggcggat
caggagtttggaatggacattggacctgtgtgttttgtgtga
DBGET
integrated database retrieval system