Siminovitchia fortis: QNH23_06650
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Entry
QNH23_06650 CDS
T09068
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sfor
Siminovitchia fortis
Pathway
sfor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QNH23_06650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfor03400
]
QNH23_06650
Enzymes [BR:
sfor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QNH23_06650
DNA repair and recombination proteins [BR:
sfor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QNH23_06650
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
WHY83051
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All DBs
Position
complement(1259404..1261236)
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AA seq
610 aa
AA seq
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MRPMLPTLTFDPPQKGNWLYELKYDGYRGLLEWTEHEVHLWSRNGKDMLPQFPEIKTFLD
ANLEKMKEYLPILLDGELVILENPFKANFSKLQQRGRMRSKEKISLESSEWPCHYLLFDL
LSCQGSDLAASPYHQRKSKLLKLVQILGLPDSPAPGDGRLFQYIPFSKSLKESLHTAMEF
DSEGIVAKQAQSKWLEGKRSANWLKIKNWKTASCFITSMDEENGYFYVGVWKEGTVFPLG
QFLFSLDSEAKAALKTTILENHTGREGSMYFVDPGICVDINYLEWTDNQLREPHFKCLRF
DLHPDDCTFEKFLYDEAMFPSDIEITHPDKVLWKKNYATKLDYVRYLRKTAHFMLPFLKN
RALTVIRSPHGVFGESFYQKNKPETSPGFVESFVVDGIDYIVCNDLKSLIWLGNQLAIEF
HIPFHTVASKYVSEIVFDLDPPDRSHFQLAVYAATILKQILDELNLLSFVKLSGNKGLQV
YIPLPEGQFTWEDTRRFTSFVAEFLVQYDPDSFTTERLKKNRGERLYVDFVQHAEGKTII
APYSVRNNEDGLVAAPIHWDELTDDLCPAQFTMNAVLKRLAQMKDPFSGYFHCKNKQPFE
KVLDLLGNQG
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaggcctatgcttcccactttaacctttgatccaccccaaaaaggaaactggctctat
gaattaaaatatgacgggtatcgtggattgttggaatggacagagcatgaagtacacctt
tggagcaggaacggcaaggatatgcttccacaattcccggaaataaaaacttttttggac
gcaaatttagaaaaaatgaaggaatatcttcccattttgttggatggggaacttgtcatt
ttggaaaatccgttcaaggctaatttttcaaagctgcagcaaaggggaaggatgcgctca
aaagaaaaaatatcactggaatcaagcgaatggccatgccattatctcctatttgattta
ttatcctgtcaaggaagcgacctggctgcctcgccctatcatcagcggaaaagcaaatta
ttaaagctggtccaaattcttgggctccctgattcccctgccccgggagatggcaggctg
ttccaatacatccccttttcaaaatcccttaaagagagtttgcataccgcgatggaattt
gacagcgaaggaattgtcgccaaacaggcacaaagcaaatggcttgagggtaaaagatcc
gcaaactggctgaaaatcaaaaattggaaaaccgcatcctgtttcatcacttccatggat
gaagagaatgggtatttttatgttggggtttggaaagaaggcactgtttttccgcttggc
caatttttattcagccttgattcggaggcgaaggcggcgttgaaaacaaccatacttgaa
aaccataccggacgggagggatcgatgtatttcgttgatcccggcatatgtgttgacatc
aactatctggaatggacggacaatcagctgcgggagccgcatttcaaatgtttgcggttt
gaccttcatccggacgactgtacttttgaaaaatttttatatgacgaagcaatgttccct
tccgacatcgaaatcactcatccggataaagttttatggaaaaaaaattatgcaacgaag
ctggactatgtccgctatcttagaaagacagcccatttcatgcttccttttttgaaaaat
cgggctcttacagttatcaggtccccgcacggtgtattcggagaatccttttatcagaag
aacaagccggaaacctcccccggtttcgttgaatcattcgtagtagatggcatcgactac
attgtatgcaacgatttgaaatcactcatatggctcggaaatcagcttgcgatcgagttc
cacatcccttttcatactgtggcaagcaagtatgtgagcgagattgtttttgaccttgac
cccccggaccggtcgcacttccagctggctgtatacgcagctacaatccttaaacagatt
ttagatgaactgaatctattgtcatttgtaaaactgtccggtaataaggggcttcaagtc
tacattccattgcctgaaggacagtttacatgggaggacacccgccggtttacatcattt
gtcgccgaatttttggtgcagtatgatccggattctttcactacggaaaggttgaaaaaa
aatcggggcgaacggctctatgtcgattttgtccagcacgccgaaggaaaaacgatcatc
gcaccttattcggtcaggaacaatgaggacggacttgtggctgcccccattcattgggac
gagctgaccgatgatctatgccccgcccagtttactatgaatgccgtcctcaaaagactt
gcccagatgaaagacccattttccggatattttcactgcaaaaacaagcagccgttcgag
aaagtgcttgatcttttgggaaatcaaggctaa
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