Shewanella frigidimarina: Sfri_3712
Help
Entry
Sfri_3712 CDS
T00395
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sfri_3712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_3712
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sfri_3712
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sfri_3712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
AAA_23
RsgA_GTPase
AAA_21
AAA_25
DnaJ_CXXCXGXG
NACHT
nSTAND3
APS_kinase
Viral_helicase1
Zn_Tnp_IS1595
Motif
Other DBs
NCBI-ProteinID:
ABI73539
UniProt:
Q07WS5
LinkDB
All DBs
Position
4402371..4405232
Genome browser
AA seq
953 aa
AA seq
DB search
MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC
PTHNQPLSAQTVSQMVDKVLAMPADSRQMLLAPVVNDRKGEHVKLLESLSAQGYIRARID
GEVCDLTDPPTLDLHIKHTIEVVVDRFKVREDMKQRLAESFETALELSGGIAKIASMDDS
KAEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVIANDEL
SLAGGAIRGWDRRNFYYFQMLSSLAEHYKFDVEKPYAELSDKVRKIVLYGSGKQNIAFKY
INDRGDVVIRNHPFEGILNNMDRRYRETESNSVRDELSKFINMQPCNSCGGSRLREEARN
VFIGELNLPQLTMWSIGEAKQYFDTVVFEGQRAQIAEKILKEISQRLGFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNT
VIVVEHDEDAIRLADHIIDIGPGAGVHGGEVICDGTLEDILNCEESVTGQYISGKKQIHI
SDQRTPIDPKKVIELFGASGNNLRDVDLTIPVGLFTCVTGVSGSGKSTLINDTFFKIAHR
MLNGATVDEPAPYRSIEGMDHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE
SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGKRYNRETLEVKY
KGKNIHEVLQMTVEDARGYFDAIPSISRKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL
AKELSKRDTGKTLYILDEPTTGLHFADIQLLLEVLHRLKSHGNTVVVIEHNLDVIKTADW
IIDLGPEGGAGGGMILAAGSPEEVAEHPESHTARFLKPMLALHSKRIKAKKAK
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggataaaattgaaatacgcggtgccagaacccacaatcttaagaacatcaatctaacc
attccccgtgacaaactcattgtgataactgggttatccggttcaggaaaatcatcatta
gccttcgatactttgtatgcagaaggccaacgtcgttatgtcgaatcgctgtcggcgtat
gcacgtcaattcttgagcttaatggaaaaacccgatgttgatcatattgaaggcttaagc
cctgccatttcaattgagcaaaaatcaacctcgcacaatccacgatctacggtcggtacc
attaccgaaatctatgactatttacgcttgttgtttgcccgtgtgggtgagcctcgctgc
ccaacgcataatcaacccttgtcggcgcaaacagtcagccagatggttgataaagtattg
gcgatgccagcagacagccgtcaaatgctgcttgctccagtggttaacgaccgtaaaggt
gaacacgttaaattgcttgaaagcttatcggcacaaggctacatccgcgcccgtattgac
ggtgaagtatgtgacttaacggatcctccaacattagatttacacatcaaacatactatt
gaagtggttgtcgatcgcttcaaagtacgcgaagacatgaaacagcgtttggctgagtcg
tttgaaaccgctttagaattatctggtggcattgcaaaaattgccagtatggatgatagc
aaagccgaagaactgatattttcagctaatttcgcgtgtccgcattgtggctattcgatg
gccgaacttgagccgcgtattttctcgtttaacaatccggccggtgcttgtcaaacttgt
gatggtttaggtgtgcagcagttttttgaccctgagcgagtaattgctaatgatgaactc
tcattagcaggcggcgcgatcagaggctgggaccgacgcaacttttactatttccagatg
ctcagctcgctagccgaacattataagtttgatgttgagaagccatatgccgaactaagc
gacaaagttagaaagatcgtcttatatggttcaggcaaacaaaatattgcctttaaatac
attaatgaccgcggcgacgtagtgatccgtaatcatccgtttgagggcattttaaataat
atggatcgccgttatcgtgaaaccgaaagtaactcggtgcgcgatgagctgtctaaattt
attaatatgcagccgtgtaacagctgtggtggttcgcgcttacgtgaagaagcccgtaac
gtatttattggtgagttaaacctaccgcaactgacaatgtggtcgattggcgaagccaaa
caatacttcgacaccgtagtgtttgaaggtcaacgcgcacaaattgccgagaaaatatta
aaagagatcagtcaacgccttggcttcttggtcaatgtggggcttaactatttaagctta
tcgcgctcagctgaaactttatcgggtggcgaggcgcaacgtattcgcttagccagccaa
attggtgcgggtttagtgggcgtaatgtacgtgcttgatgagccttcaattggtttgcat
caacgcgataacgaacgtttattacaaacccttatccatctgcgtgatttaggcaatacc
gtgattgtggttgaacacgatgaagatgcgattcgcttagcggatcacattatcgatatt
ggccctggtgctggtgtacatggtggtgaagtgatttgtgacggtaccctagaagatatt
cttaactgtgaagagtcggttacgggccaatatatttccggtaaaaagcaaatacacatt
agtgaccagcgcacccctatcgatccgaaaaaggtgattgagttatttggcgcatcgggt
aataacctaagagatgttgatttaaccattccagttggattgtttacctgtgttactggc
gtatcgggttcaggtaaatcaacactgattaacgacaccttctttaaaattgcccatcgg
atgctcaatggcgctaccgttgatgaacctgcaccctacagaagcattgaaggcatggat
cattgcgacaaagtagtcgatattgatcaaagccctattggccgtacgccacgctcgaac
cctgccacctatacgggtattttcaccccaatacgtgaactgtttgctggcacacaagaa
tcgcgcacccgtggttatcaggtgggtcgcttctcgtttaacgtcaagggcggtcgttgt
gaagcctgccaaggtgatgggttaattaaagtggaaatgcactttttacctgatgtttat
gttccttgtgattcgtgtaaaggtaagcgttataaccgcgaaaccttagaagtaaaatac
aaaggcaaaaacattcacgaagtgctgcaaatgacggttgaagatgctcgtggctatttt
gatgcgattccatctatttcacgtaaattgcaaaccttaatggatgtcggcttgtcgtac
attcgcttaggacaaagcgcgacaaccttatctggcggtgaagctcagcgcgttaaactg
gccaaagagttgtctaaacgcgatacaggtaaaaccttatacattttagatgaacccact
acagggcttcactttgccgatattcaactattgttagaagtactgcatcgcttaaagtct
catggcaacactgttgtggtgattgagcataatctagatgtgattaaaaccgcagactgg
attatcgatttaggccctgaaggtggtgctggcggcggcatgattttagccgcaggcagc
ccagaagaagtagcagagcacccagagtctcataccgcgagattcttaaagccgatgttg
gcgcttcacagcaaacgtataaaggctaaaaaagccaaataa
DBGET
integrated database retrieval system
