Syntrophobacter fumaroxidans: Sfum_1909
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Entry
Sfum_1909 CDS
T00418
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sfu
Syntrophobacter fumaroxidans
Pathway
sfu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Sfum_1909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfu03400
]
Sfum_1909
Enzymes [BR:
sfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Sfum_1909
DNA repair and recombination proteins [BR:
sfu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sfum_1909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_4
SH3_13
UvrD_C_2
HHH_5
Viral_helicase1
AAA_11
nSTAND3
AAA_28
PIF1
AAA_16
Helicase_RecD
DEAD
AAA_22
SLFN-g3_helicase
UvrD-helicase
T2SSE
PhoH
NTPase_1
AAA_29
HHH_2
MeaB
ABC_tran
TrwB_AAD_bind
AAA
ATPase_2
RsgA_GTPase
AAA_5
cobW
NACHT
TsaE
AAA_23
CPT
UvrD_C
Zeta_toxin
AAA_18
ATPase
NB-ARC
MobB
Motif
Other DBs
NCBI-ProteinID:
ABK17594
UniProt:
A0LJJ2
LinkDB
All DBs
Position
complement(2328598..2330796)
Genome browser
AA seq
732 aa
AA seq
DB search
MAEQIRGLVERLTYSAEENGYSVLKVKIPGRRELVTVVGNFVSVTPGEVLLMEGSWTVHS
RFGEQFQVERYETTMPSTEVGIRKYLGSGLIRGIGAKMADRIVDRFGVDTLEVIENEPER
LREVEGIGAYRLDRIRKAWEEQRDIRDVMVFLRTHGVNAAYAARIFKHYGKSSLEAVKEN
PYRLAMDVSGIGFLTADRIAQSLGFTADSPLRAEAGVLFVLHRSSEEGHVCVPHEWLVEQ
CRELLQIPSEVLRDAVSRLTADRRLVQESLPPQAATRFGEDRAVTLRGYHVAETEVARRL
TQLQTYRPFRRGVDPEAAVKWLKNKLPFKPAPLQEEAVKRALTDKVVVITGGPGTGKTTL
VRAILAVFREMHARICLAAPTGRAAKRLSETTRYSAGTIHRLLEYSPQAGGFVRNELKPL
PADLVIVDETSMLDLLLMHYLLKAVPPQATLVLVGDADQLPSVGPGNVLKDIIDSGRFPV
VRLDEVFRQARQSRIVVNAHLVRQGKFPQMENEREGLQDFYFIAKEDPEEVCRVILKLCT
ERIPQRFGLDPVEDIQVLSPMHRGAVGAQRLNTALQEALNPETRFVQRGDRTFRLHDKVM
QVRNNYDKDVFNGDLGRIAKIDFEEQLVEVDIDGRRVPYDFSELDELVLAYAVSIHKAQG
SEYPAVVFPLLTQHFMMLRRNLLYTAITRARKLVVVVGSRKALAIAVRNNDTDRRFTLLR
ERLEGVVFTSPE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacaaatcagaggcttggtggaacgcctcacctacagcgcggaggagaacggg
tacagcgtcctcaaggtcaaaatcccgggcaggcgggaactcgtgacggtagtggggaat
ttcgtgtcggtgacccccggcgaggtgctcctcatggaaggttcctggacggtgcattcc
cgtttcggggagcagttccaggtggagcgctacgagacgacgatgccgtccaccgaggtg
ggcatccgcaagtacctgggatccggactgatccggggtatcggggccaagatggcggac
cgcatcgtggaccgtttcggggtggataccctggaagtgatcgaaaacgaacccgaacgg
ctgcgggaggtcgaggggatcggggcgtaccggctggaccggatccgcaaggcgtgggag
gaacagagggacatccgcgacgtgatggtttttcttcggactcacggcgtcaacgcggcg
tatgcggcccgcattttcaagcactatggcaagagctccctggaagcggtcaaggagaat
ccctaccggctggccatggacgtatcggggatcggcttcctcaccgcggaccggatcgcg
cagagcctgggttttacggcggactccccgctgcgggccgaggcgggcgtcctgttcgtg
ctccaccgcagctcggaggaggggcacgtgtgcgttccgcacgaatggctggtcgaacaa
tgccgggagttgctccagattccgtccgaggtgctccgggacgccgtgtcccggctgacg
gccgaccggaggctggtccaggagtccctgccgcctcaagccgcaacccgtttcggtgag
gatcgggccgtcaccctgcggggctaccacgtggcggaaaccgaagtggcccggcggctc
acccagctgcagacgtaccggccgttccggcgcggggtggacccggaggcggcggtcaaa
tggctgaagaacaaactgcccttcaagccggctccgctgcaggaagaggcggtgaagcgc
gccttgaccgacaaggtcgtggtgatcacgggcggccccggcaccgggaagacgaccctg
gtccgggcgattctcgccgtcttcagggaaatgcacgcgcggatatgcctggccgcgccg
acggggagggcggccaagcggttgagcgaaaccacccggtactccgccgggacgattcac
cggctgctcgaatacagccctcaggccggcggtttcgtccgcaacgagctcaaacccctc
ccggcggatctcgtcatcgtcgacgagacctccatgctcgaccttctgctcatgcattac
ctgctcaaggcggtgccgccccaggcgaccctggtgctggtgggcgacgcggaccagttg
ccttcggtggggccggggaacgtgctcaaggacatcatcgattcggggcgatttcccgtg
gtgagactcgacgaagtcttccgccaggccaggcagagccgcatcgtggtcaacgcgcac
ctggtgcggcaggggaagttcccgcaaatggagaacgagcgggagggcctgcaggacttt
tacttcattgcaaaggaagaccccgaggaagtgtgccgcgtgatcctcaaactgtgcacg
gaacgcataccgcagcggttcggtctcgacccggtggaggacatccaggtgctcagcccc
atgcaccggggggccgtcggcgcccagcggctcaacaccgcgctccaggaggcgctcaac
cccgaaacccgcttcgtgcagcggggagaccggacctttcggctgcacgacaaggtcatg
caggtccgcaacaactacgacaaggacgtcttcaacggggacctcgggcgcatcgcgaag
atcgacttcgaagagcagctggtggaggtggatatcgacggccggcgggtcccatatgac
ttttcggagctcgacgaactggttctcgcctatgcggtcagcatccacaaggcgcagggc
agcgaatacccggccgttgtcttcccgctgctcacccagcatttcatgatgcttcggcgc
aatctcctctacaccgccatcacccgcgcccgcaagctcgtggttgtcgtggggagcagg
aaggccctcgccatcgccgttcggaacaacgacaccgaccggaggttcacgctgctgcgc
gaacgtttggaaggggtcgttttcacgagcccggagtga
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