Stenotrophomonas geniculata: RKE57_21275
Help
Entry
RKE57_21275 CDS
T09411
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RKE57_21275 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgen03400
]
RKE57_21275 (ligD)
Enzymes [BR:
sgen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RKE57_21275 (ligD)
DNA repair and recombination proteins [BR:
sgen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RKE57_21275 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WNF10545
LinkDB
All DBs
Position
4642733..4645219
Genome browser
AA seq
828 aa
AA seq
DB search
MPLHQYRRKRRLGGGAGQTPEPDDTRVRGDPRRRPTFVIQLHHASSRHYDFRLEMDGVLK
SWAVPKGPSLRVGEKRLAVEVEDHPLSYATFEGDIPEGHYGAGHVEVFDQGTWACEGDPL
QALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRDDGEARDAEADDLLTAPMPK
RAPAAKKRSAGKAVRSVPAARTTTRKADARWHACALQLHGARDTPYPRGFKPQLTYHRDS
APDGERWLHEIKWDGYRLLADLHDGEVKLRSRNGLDWTADFPEVVQAVRALPVRDARLDG
ELVVLDKKGRSDFAALQRVIDGSSKQPLRYIVFDLPGVAGVDISRAPLVERKALLKDLIG
PAPGTLAFSEHVINHGPQVFDASGEAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTDEFV
IVGYTAPKGSRVGFGSLLLATPDKAGLRYVGRVGTGFDDESLRALLKALRPLAVKTPVLQ
LPVHVPFRAASVRWVTPVAVAEVAFRGWGKEGLLRQASFKRLRSDKQKEDLGMSTADAEA
GGEVQITHPERVVFPKQKLRKGDVADYYQRMARWILPEIAGRPLSLLRCPDGVGKACFFQ
KHHGAGLGDAVHAVPLQQKSGREDYVYIDDARGLLQLVQMNTLELHPWGATVADPEHPDR
LVFDLDPGEGVSWAQVKAAARDVRDRLQEAGLKSFVRLSGGKGVHVVVPLKPRADWEQAR
VFCEAFARAMAERAPDHYVATMSKAKRGGVIFIDWLRNTRGATSVCSWSLRARESAGVAV
PLRWEELARVGAADAFSMAKALARAKRLKADPWQGIDALKQTLPRMDL
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgcaccagtaccggcgcaaacgccgacttggcggtggcgccgggcagacaccg
gagcctgacgacacgcgcgtccgcggtgatccgaggcggcggccgaccttcgtcatccag
ctgcaccatgccagctcgcgccactacgacttccgccttgagatggacggcgtgctgaag
agctgggcggtgccgaaaggtccttcgcttcgcgtcggtgagaagcggttggccgtggaa
gtggaagatcacccgctgtcctacgccaccttcgagggagacattcccgaaggccactac
ggcgcgggccacgtcgaggtgtttgatcagggtacctgggcctgcgaaggtgatcctctg
caggcactggcggcaggaaagatcgacttcgtgctgcatgggcaacgcctggccggtggc
tggaagctggtgcgcaccgcgatgaaaggacgccaggtgcaatggctgctgatcaagcgc
gacgatggtgaagcgcgcgacgccgaggcggatgacctgctgacggcaccgatgccgaaa
cgagcacctgcggcgaagaagcgttccgcagggaaggcggtgcgctcggtccccgccgca
cggacgaccacacgcaaggccgatgcgcgctggcatgcatgcgcactgcagctgcacggc
gcacgtgatacgccctatccccgcgggttcaaaccgcagttgacctatcatcgcgacagt
gccccggacggcgagcgctggctgcatgagatcaagtgggatggctatcggctgctggcc
gacctgcacgatggcgaggtgaaactccgctcgcgcaacggcctggactggacggccgat
tttcccgaggtcgtgcaggccgtgcgggcgctgccggtgcgtgatgcgcgactggacggt
gagctggtggtgctggacaagaaaggacgcagtgacttcgcagcgttgcagcgcgtgatc
gacggcagttcgaaacaaccactgcgctacatcgtgttcgatcttccgggtgtggccggc
gtggacatcagtcgtgcaccgctggtggagcgcaaggcgctgctgaaggacctcatcggg
ccagcgcccggcaccctggccttcagcgaacacgtgatcaaccatgggccgcaggtattc
gatgccagcggcgaggccggctttgaaggcatcgtcagcaagcaggtggatgcgccgtac
gtgaatacccgcgcgcgcagctgggtgaaggtgaagcacgaagacaccgacgagttcgtg
attgtcggctacacggcacccaagggttcccgggtgggattcggttcgctgcttctggcc
acgccggacaaggccggcctgcgctatgtcggccgcgttggcaccggcttcgacgatgaa
agcctgcgcgcgctgctcaaggcactgcggccgttggcagtgaagacgcccgtgctgcag
ctgccggtgcatgtgccgtttcgcgctgccagcgtacgctgggtgacaccagtggcggtg
gcggaggtggcgttccgtggctggggcaaggaaggcctgctgcgccaggccagtttcaag
cggctgcgcagcgacaagcagaaggaggacctgggaatgagcaccgcagatgccgaagcc
ggaggtgaggtccagatcactcatccggagcgggtggtgtttccaaagcagaaactgcgc
aagggcgacgtggccgactactatcagcgcatggcgcgctggatcctgcccgaaatcgcc
ggacgtccactgtcactgctgcgctgcccggacggcgtaggcaaggcttgcttcttccag
aagcaccatggtgccggcctgggcgatgcggtacatgcggtgccgctgcagcagaagagc
gggcgcgaggattacgtttacatcgacgacgcacggggcctgctgcagctggtgcagatg
aacaccctggagttgcatccctggggtgcaaccgtcgccgaccccgagcatccggatcgg
ctggtgttcgatcttgaccctggagaaggcgtcagctgggcacaggtgaaggccgctgcg
cgtgacgtccgtgaccgcctgcaggaggccggcctgaagagcttcgtgcggttgtccggt
ggcaagggcgtgcacgttgtggtgccgctgaagcccagggccgactgggaacaggccagg
gtgttctgcgaggcatttgcccgggcgatggcggagcgcgcgccggaccactacgtggcg
accatgagcaaggccaagcgtggcggcgtcatcttcatcgactggctgcgcaatacgcgg
ggcgccaccagcgtgtgctcgtggtcgctgcgtgcgcgcgaaagtgccggtgtggcggta
ccgctgcgctgggaggaactggcacgcgtcggtgcggccgatgcgttttcgatggccaag
gcgctggcgcgcgcgaagcggctgaaagcggatccgtggcagggcatcgatgcgttgaag
cagacgctgccgcggatggacctgtag
DBGET
integrated database retrieval system